| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is rhlG [H]
Identifier: 119716067
GI number: 119716067
Start: 1955309
End: 1956082
Strand: Reverse
Name: rhlG [H]
Synonym: Noca_1834
Alternate gene names: 119716067
Gene position: 1956082-1955309 (Counterclockwise)
Preceding gene: 119716068
Following gene: 119716061
Centisome position: 39.23
GC content: 71.83
Gene sequence:
>774_bases ATGAACCCGCTCTTCGACCTCACCGGCAAGACCGCGCTCGTCACCGGCGGCGGCCGCGGCATCGGCCGGATGGCCGCGCG CGGCCTCCTCCAGGCAGGCGCGACCGTGATCATCGCCAGCCGCAAGCTCGCCGACTGCGAGCAGACCGCGGCCGAACTGG CCGACCTCGGCCGGGTCGTCCCCCTGGCGGCGGACCTGTCCACCCAGGAGGGCTGCCGCGAACTGGCCGCCGCGGTCGCC GAGCACACCGACGCTCTGCACGTGCTGGTCAACAACGCCGGCGCGGTCTGGGGCGCTCCGTTCGCGGAGTTCCCGGCCAG CGGCTGGGACAAGGTCCTCGACCTGAACCTGAAGGGCCCCTTCTACCTGACCCAGGAGCTGATCGGCCTGCTGCGCGCGG CAGCCACGGACGGCGACCCGGCGCGCGTCGTGAACATCGGCTCGATCGACGGGCTCCGGGTCCCGGCGCTGCCGAACTTC TCCTACTCCGCGGCCAAGGCGGGCCTGCACCACCTCACCCGGGTGCTGGCCGTCGAGCTCGGCCCGGACCTCACCGTGAA CGCGATCGCGCCGGGTCCCTTCGCCTCCAAGATGATGGCGGCCACGCTCGAGAAGGAGAAGGAGACGTTTGAGGAGGTGG CACCCATGGGGCGCATCGGCGCCGACGACGACATCGCCGGCGCAATCGTCTACCTGGCTGCGCGGGCCTCGGCGTACGTG ACCGGCGTGGTGCTACCCGTTGACGGCGGCATCTCGGTCGCGTCCGTCATCTGA
Upstream 100 bases:
>100_bases GCGCAACGTCGAGGCCTACCACCAACGGCTTGGCGAGCTGCGGGCGGCGTACGGTCGCCCGCCGGTGCCGGCCGCGTCCT GACCCACCACAAGGAGAACC
Downstream 100 bases:
>100_bases GCGATCGGCGCGGAGCATGTTCAAGATGAGCCCGAGGTAGACCTCGGCGAGCTCGCTCGGGGACATCGGTCCGCGCTCGT TGTACCAGGGCGCCACGTCC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MNPLFDLTGKTALVTGGGRGIGRMAARGLLQAGATVIIASRKLADCEQTAAELADLGRVVPLAADLSTQEGCRELAAAVA EHTDALHVLVNNAGAVWGAPFAEFPASGWDKVLDLNLKGPFYLTQELIGLLRAAATDGDPARVVNIGSIDGLRVPALPNF SYSAAKAGLHHLTRVLAVELGPDLTVNAIAPGPFASKMMAATLEKEKETFEEVAPMGRIGADDDIAGAIVYLAARASAYV TGVVLPVDGGISVASVI
Sequences:
>Translated_257_residues MNPLFDLTGKTALVTGGGRGIGRMAARGLLQAGATVIIASRKLADCEQTAAELADLGRVVPLAADLSTQEGCRELAAAVA EHTDALHVLVNNAGAVWGAPFAEFPASGWDKVLDLNLKGPFYLTQELIGLLRAAATDGDPARVVNIGSIDGLRVPALPNF SYSAAKAGLHHLTRVLAVELGPDLTVNAIAPGPFASKMMAATLEKEKETFEEVAPMGRIGADDDIAGAIVYLAARASAYV TGVVLPVDGGISVASVI >Mature_257_residues MNPLFDLTGKTALVTGGGRGIGRMAARGLLQAGATVIIASRKLADCEQTAAELADLGRVVPLAADLSTQEGCRELAAAVA EHTDALHVLVNNAGAVWGAPFAEFPASGWDKVLDLNLKGPFYLTQELIGLLRAAATDGDPARVVNIGSIDGLRVPALPNF SYSAAKAGLHHLTRVLAVELGPDLTVNAIAPGPFASKMMAATLEKEKETFEEVAPMGRIGADDDIAGAIVYLAARASAYV TGVVLPVDGGISVASVI
Specific function: Required for the synthesis of the beta-hydroxy acid moiety of rhamnolipids [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=30.5343511450382, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=31.7269076305221, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=33.0708661417323, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=32.8, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=30.5220883534137, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=30.4, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI109715829, Length=234, Percent_Identity=28.6324786324786, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=29.9610894941634, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI31542939, Length=233, Percent_Identity=29.1845493562232, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=32.1052631578947, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI4503301, Length=265, Percent_Identity=27.5471698113208, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI209862901, Length=211, Percent_Identity=31.2796208530806, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI19923983, Length=211, Percent_Identity=31.2796208530806, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI186928839, Length=210, Percent_Identity=32.3809523809524, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI193804850, Length=201, Percent_Identity=31.8407960199005, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI59889578, Length=237, Percent_Identity=28.2700421940928, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI10190746, Length=214, Percent_Identity=30.8411214953271, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1789208, Length=258, Percent_Identity=36.4341085271318, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1790717, Length=263, Percent_Identity=35.361216730038, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=35.1351351351351, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=30.7086614173228, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=33.0677290836653, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=30.7377049180328, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=29.3877551020408, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=31.0756972111554, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=30.2681992337165, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=28.3400809716599, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=27.5193798449612, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=26.8482490272374, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787891, Length=260, Percent_Identity=29.2307692307692, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787526, Length=206, Percent_Identity=31.0679611650485, Blast_Score=65, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=32.1138211382114, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=34.8484848484849, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=32.0158102766798, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=30.0751879699248, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=31.7829457364341, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=30.8300395256917, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=32.962962962963, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=31.8352059925094, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=34.0823970037453, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=31.9548872180451, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=32.5925925925926, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71994604, Length=261, Percent_Identity=29.5019157088123, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=27.906976744186, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=30.1115241635688, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=29.8039215686275, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=31.8518518518519, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=30.5970149253731, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=29.5019157088123, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.0380228136882, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536651, Length=261, Percent_Identity=27.2030651340996, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=28.1954887218045, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=27.0588235294118, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=29.368029739777, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=30.4832713754647, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=25.3787878787879, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=28.4132841328413, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17555612, Length=221, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=27.7153558052434, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71997099, Length=217, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17561272, Length=269, Percent_Identity=28.6245353159851, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=264, Percent_Identity=30.6818181818182, Blast_Score=82, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=247, Percent_Identity=27.5303643724696, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=36.5079365079365, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=33.201581027668, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=28.515625, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=30.2325581395349, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=29.8804780876494, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=29.0196078431373, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI24644337, Length=176, Percent_Identity=35.2272727272727, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24586328, Length=200, Percent_Identity=33.5, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI19921754, Length=202, Percent_Identity=32.1782178217822, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI45553409, Length=201, Percent_Identity=29.3532338308458, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24647948, Length=201, Percent_Identity=29.3532338308458, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24647946, Length=202, Percent_Identity=29.2079207920792, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI28573296, Length=210, Percent_Identity=30.4761904761905, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI161076371, Length=202, Percent_Identity=32.1782178217822, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24656154, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI19922628, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI22024069, Length=202, Percent_Identity=31.1881188118812, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26421; Mature: 26421
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPLFDLTGKTALVTGGGRGIGRMAARGLLQAGATVIIASRKLADCEQTAAELADLGRVV CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCHH PLAADLSTQEGCRELAAAVAEHTDALHVLVNNAGAVWGAPFAEFPASGWDKVLDLNLKGP HHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCC FYLTQELIGLLRAAATDGDPARVVNIGSIDGLRVPALPNFSYSAAKAGLHHLTRVLAVEL HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHC GPDLTVNAIAPGPFASKMMAATLEKEKETFEEVAPMGRIGADDDIAGAIVYLAARASAYV CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEE TGVVLPVDGGISVASVI EEEEEECCCCCCHHHCC >Mature Secondary Structure MNPLFDLTGKTALVTGGGRGIGRMAARGLLQAGATVIIASRKLADCEQTAAELADLGRVV CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCHH PLAADLSTQEGCRELAAAVAEHTDALHVLVNNAGAVWGAPFAEFPASGWDKVLDLNLKGP HHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCC FYLTQELIGLLRAAATDGDPARVVNIGSIDGLRVPALPNFSYSAAKAGLHHLTRVLAVEL HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHC GPDLTVNAIAPGPFASKMMAATLEKEKETFEEVAPMGRIGADDDIAGAIVYLAARASAYV CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEE TGVVLPVDGGISVASVI EEEEEECCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9721281; 10984043 [H]