| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716011
Identifier: 119716011
GI number: 119716011
Start: 1885148
End: 1886959
Strand: Direct
Name: 119716011
Synonym: Noca_1776
Alternate gene names: NA
Gene position: 1885148-1886959 (Clockwise)
Preceding gene: 119716010
Following gene: 119716015
Centisome position: 37.81
GC content: 76.05
Gene sequence:
>1812_bases ATGAGCACGGTCGCCCGCTCCCTCGCCGCCGAGCCCGCCGACCTCGGCGGGGTCGCCGGCGGGTGGCAGCCCTCGCTCCG GCCGCCGCTGCGCCGCTGGTCGCGCTCGCCCGTCGCGGTGGCGGTCGTCGTCTCCGCGACCCTGCAGATCCTGTGGTGGC GGATCGTCGCCACGGGCGGGGGGGACCTCGCCGCCCAGGACGCGTGGGCCGAGTTCGCCCGGTTGCACCCCGGCAGCGCC TACAACCTGTCCTGGTACGGCGGCATGCACCCGGTGTCGTACAGCGTGCTCTCGCCGTACCTGATGGCCGCCGTCGGCGT CCGGCCCACGCTCGTCGTCGCGGGGACGCTCTCCGCCGGGCTGCTGACGTGGGCGCTCGTCGGCCGGCACGGCCGGACCG ACGCCCGCGCGCTGGCCGTCGGCGGGTACGCCGCGCTGGCCCTCGTCGGCAACGCCGTGTCCGGCCGGGTCACGTTCGCG GTGGGCACGGTCTTCGCGCTCGTCGCGATCTGCCTGCTGCTCGGGTGGCCCTACCAGAGGTCACCGGTGCTCACCCTCCG GCCGGCCCGCGCCATCGCCGTGGCGGTCGCCTCCGGGCTCGCGACCGCCGCGAGCCCGGTCGCCGGGTTGTTCCTCGGCC TGGTGGCGGCGACCCTGTGGCTCGCCCGACAACGCTGGGCGGCGTACGCCCTCGGGGTGACGCCGGTCGTGGTCGTCGCG CTGTCCGCGCTCCTGTTCCCCTTCTCCGGCACGCAGCCGATGCCGTGGTACTCCACGATCCTGCCCGTGCTCGTCGGTGC CGCCGTGACCGTGACGGCACCCGCGAGCTGGCGGGCCGTGCGGCTGGCGGCCGCGCTGTACGCCCCGGCCGTCCTCCTGG TGTGGCTCGTCCCCTCGCCGATCGGCACGAACATCTCGCGGCTCGGGCTGCTGTTCGGCGGCGTGCTGATGGTGGGGGCC GCGGCCGGCGGGTGGCGGACCTCGGCCCTCGCCCGGCGCCGGGGGCCGCGGGCCGCGCGGGGGTTGCTGGTCGTGGCCGT CCTGACGGCGTCGATCTGGCAGGTCGCGACCGCCGCTCGCGACGTGGTCAACGCCAGCGGCCAGACGTCCTGGGGGCCGG ACGTCGCCCCGATCCTGACGGAGCTCCAGCACCGTCGCGCCGATCGCGGCCGGGTCGAGGTGGTGCCGACCCGGAGCCAC CGCGAGGCCGCGGTGTTCGCGCCCCACGTCCCGCTCGCCCGCGGCTGGAACCGCCAGGCCGACGCGGTGCGGAACCCGCT GTTCTACCGCGACCAGCCGCTCACCAAGGTCGCGTACCGGCGGTGGCTGCACCGGTGGGCCGTGCAGTACGTCGTGCTCT CCTCGGCGGAGCCCGACGGCGCGGCGGTCGCCGAGACCGAGCTGATCACGAGCGGCCTGCCGTACCTCTCGCCGGTGTGG TCGGACGAGAACTGGACGCTCTACGCCGTCCGCCGGCCCACGCCGCTGGTCAGCCCGCCGGCGAAGGTGGTGTCCTTCGG CGCCGCCCACCTGACCGTGTACACCCCGCGCTCGGGGGACGTCGTGATCCGGGTCGCGGACTCGCCCTGGCTGAGCCTGG TCGAGGTCGATCCGCTGCCACCCGCCTCCCGGTCGTCGGTCGCCTCGTGGTTCGCGGCCCCGGCGTGCCTGTCCGGGCTG GAGACCGAGGACCAGGCGAACGCGGAGGCCCATCCGCACCGGCCCGACTGGCTGGTCCTGCACGCGCCGCGAGCCGGCAC CTACCGGATCTCCGCGCCGTACAAGCTGCCCAGGGGCAGCTCCTGTCCCTAG
Upstream 100 bases:
>100_bases CGTTCACGCTCGGCCGGCTGATGGTCTACCCGGTCCGGAACGGGGATCGCTCGGTCGCGGACGGCTCCCACGCCGGTGAG GACGACGTCGTGGCCTCGAC
Downstream 100 bases:
>100_bases CGGTGACCAGTAGCCGTCTCGGTCATCCCGGGGGCCGGGAGGTGGCCGTCGAGTTGGGGCAGAACGCCTCGCGCGGCGAG CCGGTGTGCAGTTCCTCGGG
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MSTVARSLAAEPADLGGVAGGWQPSLRPPLRRWSRSPVAVAVVVSATLQILWWRIVATGGGDLAAQDAWAEFARLHPGSA YNLSWYGGMHPVSYSVLSPYLMAAVGVRPTLVVAGTLSAGLLTWALVGRHGRTDARALAVGGYAALALVGNAVSGRVTFA VGTVFALVAICLLLGWPYQRSPVLTLRPARAIAVAVASGLATAASPVAGLFLGLVAATLWLARQRWAAYALGVTPVVVVA LSALLFPFSGTQPMPWYSTILPVLVGAAVTVTAPASWRAVRLAAALYAPAVLLVWLVPSPIGTNISRLGLLFGGVLMVGA AAGGWRTSALARRRGPRAARGLLVVAVLTASIWQVATAARDVVNASGQTSWGPDVAPILTELQHRRADRGRVEVVPTRSH REAAVFAPHVPLARGWNRQADAVRNPLFYRDQPLTKVAYRRWLHRWAVQYVVLSSAEPDGAAVAETELITSGLPYLSPVW SDENWTLYAVRRPTPLVSPPAKVVSFGAAHLTVYTPRSGDVVIRVADSPWLSLVEVDPLPPASRSSVASWFAAPACLSGL ETEDQANAEAHPHRPDWLVLHAPRAGTYRISAPYKLPRGSSCP
Sequences:
>Translated_603_residues MSTVARSLAAEPADLGGVAGGWQPSLRPPLRRWSRSPVAVAVVVSATLQILWWRIVATGGGDLAAQDAWAEFARLHPGSA YNLSWYGGMHPVSYSVLSPYLMAAVGVRPTLVVAGTLSAGLLTWALVGRHGRTDARALAVGGYAALALVGNAVSGRVTFA VGTVFALVAICLLLGWPYQRSPVLTLRPARAIAVAVASGLATAASPVAGLFLGLVAATLWLARQRWAAYALGVTPVVVVA LSALLFPFSGTQPMPWYSTILPVLVGAAVTVTAPASWRAVRLAAALYAPAVLLVWLVPSPIGTNISRLGLLFGGVLMVGA AAGGWRTSALARRRGPRAARGLLVVAVLTASIWQVATAARDVVNASGQTSWGPDVAPILTELQHRRADRGRVEVVPTRSH REAAVFAPHVPLARGWNRQADAVRNPLFYRDQPLTKVAYRRWLHRWAVQYVVLSSAEPDGAAVAETELITSGLPYLSPVW SDENWTLYAVRRPTPLVSPPAKVVSFGAAHLTVYTPRSGDVVIRVADSPWLSLVEVDPLPPASRSSVASWFAAPACLSGL ETEDQANAEAHPHRPDWLVLHAPRAGTYRISAPYKLPRGSSCP >Mature_602_residues STVARSLAAEPADLGGVAGGWQPSLRPPLRRWSRSPVAVAVVVSATLQILWWRIVATGGGDLAAQDAWAEFARLHPGSAY NLSWYGGMHPVSYSVLSPYLMAAVGVRPTLVVAGTLSAGLLTWALVGRHGRTDARALAVGGYAALALVGNAVSGRVTFAV GTVFALVAICLLLGWPYQRSPVLTLRPARAIAVAVASGLATAASPVAGLFLGLVAATLWLARQRWAAYALGVTPVVVVAL SALLFPFSGTQPMPWYSTILPVLVGAAVTVTAPASWRAVRLAAALYAPAVLLVWLVPSPIGTNISRLGLLFGGVLMVGAA AGGWRTSALARRRGPRAARGLLVVAVLTASIWQVATAARDVVNASGQTSWGPDVAPILTELQHRRADRGRVEVVPTRSHR EAAVFAPHVPLARGWNRQADAVRNPLFYRDQPLTKVAYRRWLHRWAVQYVVLSSAEPDGAAVAETELITSGLPYLSPVWS DENWTLYAVRRPTPLVSPPAKVVSFGAAHLTVYTPRSGDVVIRVADSPWLSLVEVDPLPPASRSSVASWFAAPACLSGLE TEDQANAEAHPHRPDWLVLHAPRAGTYRISAPYKLPRGSSCP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63922; Mature: 63791
Theoretical pI: Translated: 11.06; Mature: 11.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVARSLAAEPADLGGVAGGWQPSLRPPLRRWSRSPVAVAVVVSATLQILWWRIVATGG CCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHHEECCC GDLAAQDAWAEFARLHPGSAYNLSWYGGMHPVSYSVLSPYLMAAVGVRPTLVVAGTLSAG CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHH LLTWALVGRHGRTDARALAVGGYAALALVGNAVSGRVTFAVGTVFALVAICLLLGWPYQR HHHHHHHCCCCCCCCCEEEECHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC SPVLTLRPARAIAVAVASGLATAASPVAGLFLGLVAATLWLARQRWAAYALGVTPVVVVA CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH LSALLFPFSGTQPMPWYSTILPVLVGAAVTVTAPASWRAVRLAAALYAPAVLLVWLVPSP HHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC IGTNISRLGLLFGGVLMVGAAAGGWRTSALARRRGPRAARGLLVVAVLTASIWQVATAAR CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH DVVNASGQTSWGPDVAPILTELQHRRADRGRVEVVPTRSHREAAVFAPHVPLARGWNRQA HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCHHCCCCCCH DAVRNPLFYRDQPLTKVAYRRWLHRWAVQYVVLSSAEPDGAAVAETELITSGLPYLSPVW HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCCCC SDENWTLYAVRRPTPLVSPPAKVVSFGAAHLTVYTPRSGDVVIRVADSPWLSLVEVDPLP CCCCEEEEEEECCCCCCCCCHHHHHCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCC PASRSSVASWFAAPACLSGLETEDQANAEAHPHRPDWLVLHAPRAGTYRISAPYKLPRGS CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCC SCP CCC >Mature Secondary Structure STVARSLAAEPADLGGVAGGWQPSLRPPLRRWSRSPVAVAVVVSATLQILWWRIVATGG CHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHHEECCC GDLAAQDAWAEFARLHPGSAYNLSWYGGMHPVSYSVLSPYLMAAVGVRPTLVVAGTLSAG CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHH LLTWALVGRHGRTDARALAVGGYAALALVGNAVSGRVTFAVGTVFALVAICLLLGWPYQR HHHHHHHCCCCCCCCCEEEECHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC SPVLTLRPARAIAVAVASGLATAASPVAGLFLGLVAATLWLARQRWAAYALGVTPVVVVA CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH LSALLFPFSGTQPMPWYSTILPVLVGAAVTVTAPASWRAVRLAAALYAPAVLLVWLVPSP HHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC IGTNISRLGLLFGGVLMVGAAAGGWRTSALARRRGPRAARGLLVVAVLTASIWQVATAAR CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH DVVNASGQTSWGPDVAPILTELQHRRADRGRVEVVPTRSHREAAVFAPHVPLARGWNRQA HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCHHCCCCCCH DAVRNPLFYRDQPLTKVAYRRWLHRWAVQYVVLSSAEPDGAAVAETELITSGLPYLSPVW HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCCCC SDENWTLYAVRRPTPLVSPPAKVVSFGAAHLTVYTPRSGDVVIRVADSPWLSLVEVDPLP CCCCEEEEEEECCCCCCCCCHHHHHCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCC PASRSSVASWFAAPACLSGLETEDQANAEAHPHRPDWLVLHAPRAGTYRISAPYKLPRGS CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCC SCP CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA