Click here to switch to the map view.

The map label for this gene is yciO [C]

Identifier: 119715988

GI number: 119715988

Start: 1864422

End: 1865081

Strand: Direct

Name: yciO [C]

Synonym: Noca_1753

Alternate gene names: 119715988

Gene position: 1864422-1865081 (Clockwise)

Preceding gene: 119715987

Following gene: 119715989

Centisome position: 37.39

GC content: 76.06

Gene sequence:

>660_bases
GTGAGCGAGCGCTACCCGACCGGCACCGACGAGGAGCGCGAGGCCGCGGTCGAGGCCGCCAGCCTGGCCGTCCAGCGCGG
CGAGCTGGTCGTGCTGCCGACCGACACCGTGTACGGCGTGGGCGCCGACGCCTTCGATCCGGCCGCGGTCCGCGGCCTGC
TCGCGGCCAAGGGACGCGGGCGCGACCTGCCGCCGCCGGTCCTGGTCAGCGCCGCGACCACCCTCGACGCGCTCGCAGTG
CGGGTGCCCGGCTATGCACGGGCCCTGGTCGAGGCGTTCTGGCCCGGCCCGCTCACGCTGGTCTGCCACCAGCAGTCCTC
GCTCCAGTGGGACCTCGGCGACACCCGCGGCACGGTGGCCGTGCGGATGCCCGACCACGACGTGGCGCGCGAGATCCTCG
AGCGCACCGGGCCGCTCGCCGTCAGCTCCGCCAACAAGACCGGCATGCCGGCCGCCACCGACGCCGACCAGGCCGAGGAC
ATGCTCGGCGACGACGTCGCGGTCATCGTCGACGGCGGCCCGGCGCCGGGCGGCGAGGCGTCCACGATCGTCGACGTGAC
CGGCGCCCAGGGCCGGGTCCTGCGTCGTGGAGCGCTCTCGCTCGAGCGGCTCAACGAGGTGCTCGAGCCGCTCGGCGCGA
CGCTGACCGTCGAGGGCTGA

Upstream 100 bases:

>100_bases
ACCGACCGCTGGGTCGACGTCCGCGACCACGACGACCTGGCGGGCCGCGCGCGCTTCACGACCGCGCGACTGGCACGATG
ACCGGTGTGAGGTCCGAGCA

Downstream 100 bases:

>100_bases
GGGCGGGGCCGGTGCGGGAGTACCTCCTCGTCTTCCTCGTCGCGGCCGCGACGACGTACCTCCTCACGGTCATCGCGCGC
GAGATCGCCCTCCGCACCGG

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSERYPTGTDEEREAAVEAASLAVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAV
RVPGYARALVEAFWPGPLTLVCHQQSSLQWDLGDTRGTVAVRMPDHDVAREILERTGPLAVSSANKTGMPAATDADQAED
MLGDDVAVIVDGGPAPGGEASTIVDVTGAQGRVLRRGALSLERLNEVLEPLGATLTVEG

Sequences:

>Translated_219_residues
MSERYPTGTDEEREAAVEAASLAVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAV
RVPGYARALVEAFWPGPLTLVCHQQSSLQWDLGDTRGTVAVRMPDHDVAREILERTGPLAVSSANKTGMPAATDADQAED
MLGDDVAVIVDGGPAPGGEASTIVDVTGAQGRVLRRGALSLERLNEVLEPLGATLTVEG
>Mature_218_residues
SERYPTGTDEEREAAVEAASLAVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAVR
VPGYARALVEAFWPGPLTLVCHQQSSLQWDLGDTRGTVAVRMPDHDVAREILERTGPLAVSSANKTGMPAATDADQAEDM
LGDDVAVIVDGGPAPGGEASTIVDVTGAQGRVLRRGALSLERLNEVLEPLGATLTVEG

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=202, Percent_Identity=30.1980198019802, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17537239, Length=210, Percent_Identity=30.952380952381, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321269, Length=220, Percent_Identity=33.6363636363636, Blast_Score=100, Evalue=2e-22,
Organism=Drosophila melanogaster, GI78707274, Length=184, Percent_Identity=30.9782608695652, Blast_Score=74, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22701; Mature: 22570

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERYPTGTDEEREAAVEAASLAVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRG
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCHHHHHHHHHCCCCC
RDLPPPVLVSAATTLDALAVRVPGYARALVEAFWPGPLTLVCHQQSSLQWDLGDTRGTVA
CCCCCHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCEEE
VRMPDHDVAREILERTGPLAVSSANKTGMPAATDADQAEDMLGDDVAVIVDGGPAPGGEA
EECCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCC
STIVDVTGAQGRVLRRGALSLERLNEVLEPLGATLTVEG
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure 
SERYPTGTDEEREAAVEAASLAVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRG
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCHHHHHHHHHCCCCC
RDLPPPVLVSAATTLDALAVRVPGYARALVEAFWPGPLTLVCHQQSSLQWDLGDTRGTVA
CCCCCHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCEEE
VRMPDHDVAREILERTGPLAVSSANKTGMPAATDADQAEDMLGDDVAVIVDGGPAPGGEA
EECCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCC
STIVDVTGAQGRVLRRGALSLERLNEVLEPLGATLTVEG
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]