| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is tnaA [H]
Identifier: 119715859
GI number: 119715859
Start: 1722627
End: 1724015
Strand: Reverse
Name: tnaA [H]
Synonym: Noca_1624
Alternate gene names: 119715859
Gene position: 1724015-1722627 (Counterclockwise)
Preceding gene: 119715874
Following gene: 119715856
Centisome position: 34.58
GC content: 71.35
Gene sequence:
>1389_bases ATGGACCAGCCCTTCCGCACCATCATCGAGCCGTTCCGGATCCACTCGGTCGAGCCGATGCGGATGACGACCGCCGAGGA GCGCCGTACGCACCTGGCGGCGGTCGACTACAACCTCTTCCAGCTCCGCGCCGAGCACGTGCTGATCGACCTGCTCACTG ACTCCGGGACCGGTGCGATGTCGCGCGACCAGTGGGCGGCGGTGCAGCGCGGCGACGAGTCGTACGCCGGGTCGCCGTCG TACTTCGTCTTCCGCGACGCGGTGCGGCGGCTCTTCGACTTCGAGCACATCATCCCCGTGCACCAGGGTCGGGCGGCCGA GCGGATCCTGTTCTCGGTGCTCGGCGGTGCCGGCAAGGTCATCCCGAACAACACGCACTTCGACACCACGCGCGCCAACA TCGAGGCCACCGGGGCCGAGGCGGTCGACCTGGTGATCGCCGAGGGCCGCGATCCACGCTCGGACCACCCGTTCAAGGGC AACATGGACCTCGCCGCCCTCGAGCAGCTGCTGGAGGCACACGCCGACGACGTGCCCTGCGTGATGGTGACGATCACCAA CAACAGCGGCGGCGGGCAGCCGGTCTCGCTGGCCAACCTGCGCGGCGTCCGCGCGCTGTGCGACCGGTTCGGCAAGCCGC TGTTCCTGGACGCGTGCCGGTTCGCCGAGAACGCCTGGTTCATCCGCGAGCGCGAGGCGGGCCAGGGCGAGCGGGACGTC GTCGACATCATCCGGGACGTGACCGGCCTCGCCGACGGGGTGACGATGAGCGCGAAGAAGGACCCGCTCGGCAACATCGG CGGCTGGCTCGCGCTGGCCGACGACGACCTGGCGGCGCAGTGTCGCAACATCGTGATCCTGACCGAGGGCTTCCCGACGT ACGGCGGCCTGGCCGGCCGCGACCTCGAGGCGCTCGCGCAGGGCCTCGCCGAGGTGGTGCAGCACGACTACCTGCGCTAC CGGATCGGCTCGACCGCCTACCTCGGCCGGGCGCTCGCCGAGCGCGGCGTGCCGGTGCTCAGCCCGTTCGGCGGGCACGC GATCTACCTCGACGCCCGCGCCCTGCTCCCCCACCTCGACCCGCTGGAGTACCCCGGCCAGGCGGTCGCCGTCGCGCTCT ACGAGATCGGCGGCATCCGCAGCTGCGAGATCGGCACGGTGATGTTCGGGCGGCACCCCGACGGCTCGGAGCAGCCGGCC GCCATGGACCTGGTCCGCCTCGCGATCCCGCGGCGCACCTACACCCAGAGCCACATCGACTACGTCATCGAGGTGTGCGA GCGGATCCTGGACCGCGCGAGCGACCTGCCGGGCTACCGGATCGTCGAGGAGCCGCCGGCGCTGCGGCACTTCACCGCGA GGTTCGCGCCGCTCGGTCGCACGGCATGA
Upstream 100 bases:
>100_bases AAGCGGAACCGGTGTCACTCGGACCGATCGTAAAGCGGATCGCCGCACCTGTGGTCCGTCGGCCCTTCTGAACCGGGCCT CGCCCTTCCATCCTGGTCCC
Downstream 100 bases:
>100_bases CGTGACCTGCGGTCCACGCCGCCCCCTCGGCGTGGACCGCAGCCGACCCGGTGGCGTCAGGCGCCCGCGGGTGCTGCCGG CTCCGGCCCGGGCTGGATCG
Product: tryptophanase
Products: NA
Alternate protein names: L-tryptophan indole-lyase; TNase [H]
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MDQPFRTIIEPFRIHSVEPMRMTTAEERRTHLAAVDYNLFQLRAEHVLIDLLTDSGTGAMSRDQWAAVQRGDESYAGSPS YFVFRDAVRRLFDFEHIIPVHQGRAAERILFSVLGGAGKVIPNNTHFDTTRANIEATGAEAVDLVIAEGRDPRSDHPFKG NMDLAALEQLLEAHADDVPCVMVTITNNSGGGQPVSLANLRGVRALCDRFGKPLFLDACRFAENAWFIREREAGQGERDV VDIIRDVTGLADGVTMSAKKDPLGNIGGWLALADDDLAAQCRNIVILTEGFPTYGGLAGRDLEALAQGLAEVVQHDYLRY RIGSTAYLGRALAERGVPVLSPFGGHAIYLDARALLPHLDPLEYPGQAVAVALYEIGGIRSCEIGTVMFGRHPDGSEQPA AMDLVRLAIPRRTYTQSHIDYVIEVCERILDRASDLPGYRIVEEPPALRHFTARFAPLGRTA
Sequences:
>Translated_462_residues MDQPFRTIIEPFRIHSVEPMRMTTAEERRTHLAAVDYNLFQLRAEHVLIDLLTDSGTGAMSRDQWAAVQRGDESYAGSPS YFVFRDAVRRLFDFEHIIPVHQGRAAERILFSVLGGAGKVIPNNTHFDTTRANIEATGAEAVDLVIAEGRDPRSDHPFKG NMDLAALEQLLEAHADDVPCVMVTITNNSGGGQPVSLANLRGVRALCDRFGKPLFLDACRFAENAWFIREREAGQGERDV VDIIRDVTGLADGVTMSAKKDPLGNIGGWLALADDDLAAQCRNIVILTEGFPTYGGLAGRDLEALAQGLAEVVQHDYLRY RIGSTAYLGRALAERGVPVLSPFGGHAIYLDARALLPHLDPLEYPGQAVAVALYEIGGIRSCEIGTVMFGRHPDGSEQPA AMDLVRLAIPRRTYTQSHIDYVIEVCERILDRASDLPGYRIVEEPPALRHFTARFAPLGRTA >Mature_462_residues MDQPFRTIIEPFRIHSVEPMRMTTAEERRTHLAAVDYNLFQLRAEHVLIDLLTDSGTGAMSRDQWAAVQRGDESYAGSPS YFVFRDAVRRLFDFEHIIPVHQGRAAERILFSVLGGAGKVIPNNTHFDTTRANIEATGAEAVDLVIAEGRDPRSDHPFKG NMDLAALEQLLEAHADDVPCVMVTITNNSGGGQPVSLANLRGVRALCDRFGKPLFLDACRFAENAWFIREREAGQGERDV VDIIRDVTGLADGVTMSAKKDPLGNIGGWLALADDDLAAQCRNIVILTEGFPTYGGLAGRDLEALAQGLAEVVQHDYLRY RIGSTAYLGRALAERGVPVLSPFGGHAIYLDARALLPHLDPLEYPGQAVAVALYEIGGIRSCEIGTVMFGRHPDGSEQPA AMDLVRLAIPRRTYTQSHIDYVIEVCERILDRASDLPGYRIVEEPPALRHFTARFAPLGRTA
Specific function: Tryptophan catabolism. [C]
COG id: COG3033
COG function: function code E; Tryptophanase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the beta-eliminating lyase family [H]
Homologues:
Organism=Escherichia coli, GI87082323, Length=468, Percent_Identity=41.8803418803419, Blast_Score=374, Evalue=1e-105,
Paralogues:
None
Copy number: 7160 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 460 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001597 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 - InterPro: IPR011166 - InterPro: IPR018176 [H]
Pfam domain/function: PF01212 Beta_elim_lyase [H]
EC number: =4.1.99.1 [H]
Molecular weight: Translated: 50751; Mature: 50751
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQPFRTIIEPFRIHSVEPMRMTTAEERRTHLAAVDYNLFQLRAEHVLIDLLTDSGTGAM CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHEEHHCCHHHHHHHHHHEEEEEEECCCCCCC SRDQWAAVQRGDESYAGSPSYFVFRDAVRRLFDFEHIIPVHQGRAAERILFSVLGGAGKV CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC IPNNTHFDTTRANIEATGAEAVDLVIAEGRDPRSDHPFKGNMDLAALEQLLEAHADDVPC CCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE VMVTITNNSGGGQPVSLANLRGVRALCDRFGKPLFLDACRFAENAWFIREREAGQGERDV EEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCEEHHHHHHCCCCEEEEECCCCCCHHHH VDIIRDVTGLADGVTMSAKKDPLGNIGGWLALADDDLAAQCRNIVILTEGFPTYGGLAGR HHHHHHHHHHHCCCEECCCCCCCCCCCCEEEECCCHHHHHHCCEEEEECCCCCCCCCCCC DLEALAQGLAEVVQHDYLRYRIGSTAYLGRALAERGVPVLSPFGGHAIYLDARALLPHLD CHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHCCCCC PLEYPGQAVAVALYEIGGIRSCEIGTVMFGRHPDGSEQPAAMDLVRLAIPRRTYTQSHID CCCCCCHHHEEEEHHHCCCCCCEECEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH YVIEVCERILDRASDLPGYRIVEEPPALRHFTARFAPLGRTA HHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MDQPFRTIIEPFRIHSVEPMRMTTAEERRTHLAAVDYNLFQLRAEHVLIDLLTDSGTGAM CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHEEHHCCHHHHHHHHHHEEEEEEECCCCCCC SRDQWAAVQRGDESYAGSPSYFVFRDAVRRLFDFEHIIPVHQGRAAERILFSVLGGAGKV CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC IPNNTHFDTTRANIEATGAEAVDLVIAEGRDPRSDHPFKGNMDLAALEQLLEAHADDVPC CCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE VMVTITNNSGGGQPVSLANLRGVRALCDRFGKPLFLDACRFAENAWFIREREAGQGERDV EEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCEEHHHHHHCCCCEEEEECCCCCCHHHH VDIIRDVTGLADGVTMSAKKDPLGNIGGWLALADDDLAAQCRNIVILTEGFPTYGGLAGR HHHHHHHHHHHCCCEECCCCCCCCCCCCEEEECCCHHHHHHCCEEEEECCCCCCCCCCCC DLEALAQGLAEVVQHDYLRYRIGSTAYLGRALAERGVPVLSPFGGHAIYLDARALLPHLD CHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHCCCCC PLEYPGQAVAVALYEIGGIRSCEIGTVMFGRHPDGSEQPAAMDLVRLAIPRRTYTQSHID CCCCCCHHHEEEEHHHCCCCCCEECEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH YVIEVCERILDRASDLPGYRIVEEPPALRHFTARFAPLGRTA HHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9765573 [H]