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The map label for this gene is dedA [C]

Identifier: 119715788

GI number: 119715788

Start: 1645263

End: 1645913

Strand: Reverse

Name: dedA [C]

Synonym: Noca_1552

Alternate gene names: 119715788

Gene position: 1645913-1645263 (Counterclockwise)

Preceding gene: 119715814

Following gene: 119715787

Centisome position: 33.01

GC content: 65.59

Gene sequence:

>651_bases
GTGGTTCCGCTGCTGCTCGGCCTCAACTGGATGAATCCGGACTGGCTACTGCAGCAGTTCGGCCCGTCATTGGTCTGGGT
CAGCCTGCTGATGATCTTCGTCGAATGCGGCCTGCTGTTCCCGTTCCTGCCCGGCGACACGCTGCTGTTCGCGCTCGGGC
TCTTCGTCGCCACCGGCGACATCTCGCTGCTGTCGGGAAGCCACGGCGTCGAGCTGGCGCTCGCGCTCGGCATGTTCACG
GCCGCCGCATTCCTCGGCAACATTGCGGGGTTCGAGATCGGCCGCCTCATCGGGCCGCGGCTCTACCGACGCGACAGCCG
CCTGCTGCGGCGCCGCCACCTCGACAAGACGCACGCATTCTTCCAACGCCACGGCAATCGAGCGATCGTGATCGGCCGCT
TCGTCCCCTTCATTCGCACCTACATCACATTGACCGCCGGCGTTGCTCGCATGGAACGACGCCGATTCGTCCTCTGGAGC
GCCCTTGGAGCGACGGCCTGGGTCGCCAGCATCACTCTCCTCGGATACTTCCTCGGCACCACGGTCCCGTCGATGAAGGA
CAACATCGACTCCGCCATCCTCGCCATTCTGGCGTTCTCAGCACTGCCGGCCGCCTATCACTGGTGGCGCCGCCGCCAGA
CGCAGACCTGA

Upstream 100 bases:

>100_bases
GCACCAGTCGCGGACCCATCCCAAGGCGGGGCGGCTCAACCACCGCGCGCCAACAGCCGCACGGATGCCGCGGGCGGGGT
GCTGTCGAATGAGAGGCCTC

Downstream 100 bases:

>100_bases
CGCCTGCTCTGGAGGCGTCCCGGCCCAGGACGGACTTTCCGGCTTCACGTGGCCTTCACTCGACCAAGGCCATCCTCACC
CTCATGACCATCCAGACAGT

Product: DedA family membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVPLLLGLNWMNPDWLLQQFGPSLVWVSLLMIFVECGLLFPFLPGDTLLFALGLFVATGDISLLSGSHGVELALALGMFT
AAAFLGNIAGFEIGRLIGPRLYRRDSRLLRRRHLDKTHAFFQRHGNRAIVIGRFVPFIRTYITLTAGVARMERRRFVLWS
ALGATAWVASITLLGYFLGTTVPSMKDNIDSAILAILAFSALPAAYHWWRRRQTQT

Sequences:

>Translated_216_residues
MVPLLLGLNWMNPDWLLQQFGPSLVWVSLLMIFVECGLLFPFLPGDTLLFALGLFVATGDISLLSGSHGVELALALGMFT
AAAFLGNIAGFEIGRLIGPRLYRRDSRLLRRRHLDKTHAFFQRHGNRAIVIGRFVPFIRTYITLTAGVARMERRRFVLWS
ALGATAWVASITLLGYFLGTTVPSMKDNIDSAILAILAFSALPAAYHWWRRRQTQT
>Mature_216_residues
MVPLLLGLNWMNPDWLLQQFGPSLVWVSLLMIFVECGLLFPFLPGDTLLFALGLFVATGDISLLSGSHGVELALALGMFT
AAAFLGNIAGFEIGRLIGPRLYRRDSRLLRRRHLDKTHAFFQRHGNRAIVIGRFVPFIRTYITLTAGVARMERRRFVLWS
ALGATAWVASITLLGYFLGTTVPSMKDNIDSAILAILAFSALPAAYHWWRRRQTQT

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=198, Percent_Identity=36.8686868686869, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI1789481, Length=160, Percent_Identity=32.5, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1789384, Length=165, Percent_Identity=32.1212121212121, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24191; Mature: 24191

Theoretical pI: Translated: 11.65; Mature: 11.65

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPLLLGLNWMNPDWLLQQFGPSLVWVSLLMIFVECGLLFPFLPGDTLLFALGLFVATGD
CCCEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
ISLLSGSHGVELALALGMFTAAAFLGNIAGFEIGRLIGPRLYRRDSRLLRRRHLDKTHAF
HHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQRHGNRAIVIGRFVPFIRTYITLTAGVARMERRRFVLWSALGATAWVASITLLGYFLGT
HHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TVPSMKDNIDSAILAILAFSALPAAYHWWRRRQTQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVPLLLGLNWMNPDWLLQQFGPSLVWVSLLMIFVECGLLFPFLPGDTLLFALGLFVATGD
CCCEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
ISLLSGSHGVELALALGMFTAAAFLGNIAGFEIGRLIGPRLYRRDSRLLRRRHLDKTHAF
HHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQRHGNRAIVIGRFVPFIRTYITLTAGVARMERRRFVLWSALGATAWVASITLLGYFLGT
HHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TVPSMKDNIDSAILAILAFSALPAAYHWWRRRQTQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]