BacMap

Definition	Nocardioides sp. JS614 chromosome, complete genome.
Accession	NC_008699
Length	4,985,871

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The map label for this gene is ygfF [C]

Identifier: 119715702

GI number: 119715702

Start: 1554121

End: 1554882

Strand: Reverse

Name: ygfF [C]

Synonym: Noca_1466

Alternate gene names: 119715702

Gene position: 1554882-1554121 (Counterclockwise)

Preceding gene: 119715705

Following gene: 119715699

Centisome position: 31.19

GC content: 72.83

Gene sequence:

>762_bases
ATGTCGAGAACCGCACTGGTCACCGGCCCCACCGCGGGGATCGGCCGCTCCTTCGCCCACCAGCTCGCCGAGCGGGGCCA
CGACCTGGTGCTGGTCGCGCGCGACCAGGCCCGGCTGGAGGCCGAGGCCGAGGAGCTGCGCACGGCGTACGGCGTGCTGG
TGGAGGTGCTGCCCGCCGACCTCACCGACCGGGCGCAGCTCGACGTGGTCGCCGCGCGGCTCGCCGACCCGGACCGCCCC
GTGGACCTGCTGGTCAACAACGCCGGCTTCGGCCTGAAGAAACGGTTCCTCGACAACTCGGTCGAGGAGGAGCAGGCGAT
GCTCGACGTGCTGGTCACCGCGGTGATGCGGCTGAGCCACGCCGCGCTGGCCCCGATGTCGGAGCGCGGCAGCGGCGGCA
TCATCAACGTCTCCAGCGTCGCCTCGTTCCTGCCGCGCGGGTCCTACTCGGCCGCCAAGGCGTGGGTGAACAGCTTCTCG
GAGTGGGCCCACTACGAGTACGGGCCGCAGGGCGTGACGGTGACCTGCCTGTGCCCCGGCTTCACGCGCACGGAGTTCCA
CGAGCGGATGGGGGTGCGCCGCGACTCGGCCCCGGGGTTCATGTGGCTCGACGCGGACACGCTGGTGGCCCGGGCGCTCA
AGGACCACGCGCGGGGCAAGCCGTTCTCGATCCCGGGCGCGCAGTACCAGGCCATCGCCACCGCGGCCCGACTCGTGCCG
ACCGGCGTGCTGCAGCGGTTCCAGTCGATGGGCCGCCGCTGA

Upstream 100 bases:

>100_bases
GCGGAGCGGTGGAGACGAAGAACGTCGTGGGGTGCTCATCGTTGCCCATCATGCCGGACGGGGGTGCCGGGATGGTGCAG
CCACCTGTTTGACTTGCGTC

Downstream 100 bases:

>100_bases
CCCTCAGCCCGCCACGGTGGGCGTGCCGCGCCCGGAGCGCTGCGAGGCCCCTCGGGCGAGCTCGAGCAGGCGGGCGTACT
GCTCCGGGTCGGTGGTGTTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSRTALVTGPTAGIGRSFAHQLAERGHDLVLVARDQARLEAEAEELRTAYGVLVEVLPADLTDRAQLDVVAARLADPDRP
VDLLVNNAGFGLKKRFLDNSVEEEQAMLDVLVTAVMRLSHAALAPMSERGSGGIINVSSVASFLPRGSYSAAKAWVNSFS
EWAHYEYGPQGVTVTCLCPGFTRTEFHERMGVRRDSAPGFMWLDADTLVARALKDHARGKPFSIPGAQYQAIATAARLVP
TGVLQRFQSMGRR

Sequences:

>Translated_253_residues
MSRTALVTGPTAGIGRSFAHQLAERGHDLVLVARDQARLEAEAEELRTAYGVLVEVLPADLTDRAQLDVVAARLADPDRP
VDLLVNNAGFGLKKRFLDNSVEEEQAMLDVLVTAVMRLSHAALAPMSERGSGGIINVSSVASFLPRGSYSAAKAWVNSFS
EWAHYEYGPQGVTVTCLCPGFTRTEFHERMGVRRDSAPGFMWLDADTLVARALKDHARGKPFSIPGAQYQAIATAARLVP
TGVLQRFQSMGRR
>Mature_252_residues
SRTALVTGPTAGIGRSFAHQLAERGHDLVLVARDQARLEAEAEELRTAYGVLVEVLPADLTDRAQLDVVAARLADPDRPV
DLLVNNAGFGLKKRFLDNSVEEEQAMLDVLVTAVMRLSHAALAPMSERGSGGIINVSSVASFLPRGSYSAAKAWVNSFSE
WAHYEYGPQGVTVTCLCPGFTRTEFHERMGVRRDSAPGFMWLDADTLVARALKDHARGKPFSIPGAQYQAIATAARLVPT
GVLQRFQSMGRR

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI226371731, Length=187, Percent_Identity=31.0160427807487, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=31.7708333333333, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI4557649, Length=185, Percent_Identity=32.972972972973, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI32483357, Length=216, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI20149619, Length=214, Percent_Identity=27.1028037383178, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=30, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=29.2307692307692, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=30.6122448979592, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI4503817, Length=188, Percent_Identity=30.3191489361702, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI5031737, Length=196, Percent_Identity=30.6122448979592, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=206, Percent_Identity=28.1553398058252, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI7705925, Length=190, Percent_Identity=30.5263157894737, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=31.7073170731707, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=32.0855614973262, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082100, Length=200, Percent_Identity=30.5, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87082160, Length=224, Percent_Identity=29.0178571428571, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=28.3422459893048, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788459, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789208, Length=194, Percent_Identity=28.3505154639175, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786701, Length=201, Percent_Identity=26.3681592039801, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=233, Percent_Identity=29.1845493562232, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=225, Percent_Identity=28.8888888888889, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=197, Percent_Identity=27.9187817258883, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=231, Percent_Identity=26.4069264069264, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646214, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=209, Percent_Identity=29.1866028708134, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=205, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17557668, Length=264, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=200, Percent_Identity=29.5, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560176, Length=188, Percent_Identity=28.7234042553192, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=31.1881188118812, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI25152911, Length=203, Percent_Identity=29.064039408867, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=211, Percent_Identity=28.436018957346, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=27.319587628866, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=29, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=208, Percent_Identity=27.4038461538462, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=26.2910798122066, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=248, Percent_Identity=24.5967741935484, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=206, Percent_Identity=29.126213592233, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=228, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6319635, Length=172, Percent_Identity=27.906976744186, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI23397609, Length=222, Percent_Identity=34.2342342342342, Blast_Score=110, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24640442, Length=197, Percent_Identity=33.502538071066, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24584752, Length=239, Percent_Identity=30.5439330543933, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI28571526, Length=223, Percent_Identity=32.2869955156951, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI21357041, Length=223, Percent_Identity=30.4932735426009, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=29.1666666666667, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=31.3829787234043, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=31.3829787234043, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574402, Length=189, Percent_Identity=31.2169312169312, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24584744, Length=189, Percent_Identity=31.2169312169312, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644339, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643142, Length=200, Percent_Identity=31.5, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355319, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356301, Length=246, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649181, Length=187, Percent_Identity=25.1336898395722, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=28.1914893617021, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24580925, Length=190, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27478; Mature: 27346

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTALVTGPTAGIGRSFAHQLAERGHDLVLVARDQARLEAEAEELRTAYGVLVEVLPAD
CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
LTDRAQLDVVAARLADPDRPVDLLVNNAGFGLKKRFLDNSVEEEQAMLDVLVTAVMRLSH
CCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AALAPMSERGSGGIINVSSVASFLPRGSYSAAKAWVNSFSEWAHYEYGPQGVTVTCLCPG
HHHCCCCCCCCCCEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
FTRTEFHERMGVRRDSAPGFMWLDADTLVARALKDHARGKPFSIPGAQYQAIATAARLVP
CCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
TGVLQRFQSMGRR
HHHHHHHHHHCCC
>Mature Secondary Structure 
SRTALVTGPTAGIGRSFAHQLAERGHDLVLVARDQARLEAEAEELRTAYGVLVEVLPAD
CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
LTDRAQLDVVAARLADPDRPVDLLVNNAGFGLKKRFLDNSVEEEQAMLDVLVTAVMRLSH
CCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AALAPMSERGSGGIINVSSVASFLPRGSYSAAKAWVNSFSEWAHYEYGPQGVTVTCLCPG
HHHCCCCCCCCCCEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
FTRTEFHERMGVRRDSAPGFMWLDADTLVARALKDHARGKPFSIPGAQYQAIATAARLVP
CCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
TGVLQRFQSMGRR
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]