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The map label for this gene is orn [H]

Identifier: 119715587

GI number: 119715587

Start: 1429063

End: 1429731

Strand: Reverse

Name: orn [H]

Synonym: Noca_1351

Alternate gene names: 119715587

Gene position: 1429731-1429063 (Counterclockwise)

Preceding gene: 119715596

Following gene: 119715580

Centisome position: 28.68

GC content: 69.81

Gene sequence:

>669_bases
GTGAACGAACGACTCGTCTGGATCGACTGCGAGATGACGGGCCTGGATCTGCGGGCCGACGCGCTGATCGAGGTGGCCGC
GCTGGTCACCGACTTCGACCTCAACGTGCTCGGGAGCGGCGTCGACCTGATCGTCAAGCCACCCGCGGAGGCCCTCGACC
AGATGAACGAGTTCGTCCGGGACATGCACGAGAAGTCCGGGCTGCTGCGCGAGCTGGACTCCGGCATCTCCCTCGACGAG
GCTGAGGAGCAGGTGCTGGCCTACGTCAAGGAGTTCTGCCCCGACGGCAGCCGCCCGCCGCTGGCCGGCAACACCGTGGC
GACCGACCGGGCGTTCCTCGCCCGGGACATGCCGAACCTCGAGACGTTCCTTCACTACCGGATCGTCGACGTGTCCTCGA
TCAAGGAGCTCTCGCGCCGGTGGTACCCCCGCGCGTACTTCCAGGCGCCGGCCAAGCGCGGGAACCACCGGGCACTCGCC
GACATCCAGGAGAGCATCGAGGAGCTGCGCTACTACCGCGACGCCGTGTTCGTGCCCTCCCCCGGCCCCGACAGCGACGC
GGCGCGCGCGATCGCGCTCAAGCACGGCGGCTCGCTCACCGGGCTCTCCGGCGACGAGGCCGTGGAGACCGCGTCCGGCC
CGGGGGCCGATTCTGCGGATCAGCCCTAG

Upstream 100 bases:

>100_bases
GCCACCCGGTCAACGTCGTCGCCACCCCGCGACCCTAGAGCCCGAGGCTGAACTGTGACTGAGAGAAGCGCCGACCGGGC
CCGGGGCTAAGGTGGCAGCC

Downstream 100 bases:

>100_bases
TTCCCCTACACTTTCGGTCGGTCCCGACACCGTCGGAACCGCTCATGGTGGGTGTAGCTCAGCTGGTAGAGCACCTGGTT
GTGGTCCAGGTGGCCGCGGG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQMNEFVRDMHEKSGLLRELDSGISLDE
AEEQVLAYVKEFCPDGSRPPLAGNTVATDRAFLARDMPNLETFLHYRIVDVSSIKELSRRWYPRAYFQAPAKRGNHRALA
DIQESIEELRYYRDAVFVPSPGPDSDAARAIALKHGGSLTGLSGDEAVETASGPGADSADQP

Sequences:

>Translated_222_residues
MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQMNEFVRDMHEKSGLLRELDSGISLDE
AEEQVLAYVKEFCPDGSRPPLAGNTVATDRAFLARDMPNLETFLHYRIVDVSSIKELSRRWYPRAYFQAPAKRGNHRALA
DIQESIEELRYYRDAVFVPSPGPDSDAARAIALKHGGSLTGLSGDEAVETASGPGADSADQP
>Mature_222_residues
MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQMNEFVRDMHEKSGLLRELDSGISLDE
AEEQVLAYVKEFCPDGSRPPLAGNTVATDRAFLARDMPNLETFLHYRIVDVSSIKELSRRWYPRAYFQAPAKRGNHRALA
DIQESIEELRYYRDAVFVPSPGPDSDAARAIALKHGGSLTGLSGDEAVETASGPGADSADQP

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=178, Percent_Identity=50.561797752809, Blast_Score=189, Evalue=2e-48,
Organism=Escherichia coli, GI87082382, Length=171, Percent_Identity=43.859649122807, Blast_Score=144, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI17557752, Length=183, Percent_Identity=42.6229508196721, Blast_Score=167, Evalue=5e-42,
Organism=Saccharomyces cerevisiae, GI6323088, Length=183, Percent_Identity=39.344262295082, Blast_Score=130, Evalue=1e-31,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=47.1264367816092, Blast_Score=163, Evalue=8e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 24347; Mature: 24347

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQMNEFVR
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCEEEECCCHHHHHHHHHHHH
DMHEKSGLLRELDSGISLDEAEEQVLAYVKEFCPDGSRPPLAGNTVATDRAFLARDMPNL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCH
ETFLHYRIVDVSSIKELSRRWYPRAYFQAPAKRGNHRALADIQESIEELRYYRDAVFVPS
HHHHHHHCCCHHHHHHHHHHCCCHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHEEECCC
PGPDSDAARAIALKHGGSLTGLSGDEAVETASGPGADSADQP
CCCCCHHHHEEHEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQMNEFVR
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCEEEECCCHHHHHHHHHHHH
DMHEKSGLLRELDSGISLDEAEEQVLAYVKEFCPDGSRPPLAGNTVATDRAFLARDMPNL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCH
ETFLHYRIVDVSSIKELSRRWYPRAYFQAPAKRGNHRALADIQESIEELRYYRDAVFVPS
HHHHHHHCCCHHHHHHHHHHCCCHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHEEECCC
PGPDSDAARAIALKHGGSLTGLSGDEAVETASGPGADSADQP
CCCCCHHHHEEHEECCCCCCCCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10913103; 12000953 [H]