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The map label for this gene is nagD [H]

Identifier: 119715478

GI number: 119715478

Start: 1317637

End: 1318443

Strand: Direct

Name: nagD [H]

Synonym: Noca_1242

Alternate gene names: 119715478

Gene position: 1317637-1318443 (Clockwise)

Preceding gene: 119715477

Following gene: 119715479

Centisome position: 26.43

GC content: 71.38

Gene sequence:

>807_bases
ATGGCGGCCATGACGACTCGCCCCGTGGAGACCTGGCTGACCGACATGGACGGCGTGCTCGTGCACGAGGAGGTGCCGAT
CCCGGGCGCCCAGGAGTTCATCGAGGCGCTCAAGGCCTCGCAGCGCCGGTTCCTGGTGCTGACCAACAACTCCATCTTCA
CCCCGCGTGACCTGCGCGCCCGGCTGCTCGGCAGCGGCATCGACGTGCCCGAGGAGGCGATCTGGACCTCCGCGCTGGCG
ACCGCGCAGTTCCTCGACGACCAGCGCCCGCGCGGCACGGCGTACGTCGTCGGCGAGGCGGGCCTGACCACGGCGCTGCA
CGACATCGGCTACGTGATGACCGACCGCGACCCGGACTACGTCGTGCTGGGGGAGACCCGCACGTACTCCTTCGAGGCGA
TCACGCGGGCGATCCGGCTGGTCGCTGCCGGGGCCCGCTTCATCGCCACCAACCCCGACGCCAGCGGGCCGAGCCAGCAG
GGGATGCTGCCGGCCACCGGCTCGGTCGCGGCGTTGATCAGCACCGCGACCGGGCGGCGGCCGTACTTCATCGGCAAGCC
CAACCCGCTGATGATGCGCAGCGCGCTGAACCGGCTCGAGGCACACTCCGAGACGACCGTGATGGTCGGGGACCGGATGG
ACACCGACATCATCAGCGGCCTGGAGGCGGGGCTGCGCACCATCTTGGTGACCACCGGCTCCACCCGCCCCGAGCAGGTC
TCGACCTTCCCCTACCGGCCGACCCGGGTGGTCGACTCCGTGGCCGACCTCCTCGAGCTCGTCGACCCACGCCCCGACGC
CGGCTGA

Upstream 100 bases:

>100_bases
GCTCGGCGGGCGGGTGACCGGGTCGCATCCCGCCGAGGGCATCGAGGTCCTGCTGCCCCGTCGCTGACTCCTAGGACGCT
GGGTCGGGGCCTGGGCAAGA

Downstream 100 bases:

>100_bases
GGCCTGCGGCTGCGCCGGCCGGTCTTCCGGTTTCATCGGCCGGCCGATGAAGCTCGCGCGAGTCCGCATCCCGGCCCCGC
GGCTACGCGGGCCGCGTCGG

Product: HAD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MAAMTTRPVETWLTDMDGVLVHEEVPIPGAQEFIEALKASQRRFLVLTNNSIFTPRDLRARLLGSGIDVPEEAIWTSALA
TAQFLDDQRPRGTAYVVGEAGLTTALHDIGYVMTDRDPDYVVLGETRTYSFEAITRAIRLVAAGARFIATNPDASGPSQQ
GMLPATGSVAALISTATGRRPYFIGKPNPLMMRSALNRLEAHSETTVMVGDRMDTDIISGLEAGLRTILVTTGSTRPEQV
STFPYRPTRVVDSVADLLELVDPRPDAG

Sequences:

>Translated_268_residues
MAAMTTRPVETWLTDMDGVLVHEEVPIPGAQEFIEALKASQRRFLVLTNNSIFTPRDLRARLLGSGIDVPEEAIWTSALA
TAQFLDDQRPRGTAYVVGEAGLTTALHDIGYVMTDRDPDYVVLGETRTYSFEAITRAIRLVAAGARFIATNPDASGPSQQ
GMLPATGSVAALISTATGRRPYFIGKPNPLMMRSALNRLEAHSETTVMVGDRMDTDIISGLEAGLRTILVTTGSTRPEQV
STFPYRPTRVVDSVADLLELVDPRPDAG
>Mature_267_residues
AAMTTRPVETWLTDMDGVLVHEEVPIPGAQEFIEALKASQRRFLVLTNNSIFTPRDLRARLLGSGIDVPEEAIWTSALAT
AQFLDDQRPRGTAYVVGEAGLTTALHDIGYVMTDRDPDYVVLGETRTYSFEAITRAIRLVAAGARFIATNPDASGPSQQG
MLPATGSVAALISTATGRRPYFIGKPNPLMMRSALNRLEAHSETTVMVGDRMDTDIISGLEAGLRTILVTTGSTRPEQVS
TFPYRPTRVVDSVADLLELVDPRPDAG

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI10092677, Length=272, Percent_Identity=32.3529411764706, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI108796653, Length=289, Percent_Identity=30.7958477508651, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI14149777, Length=249, Percent_Identity=28.5140562248996, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI269847098, Length=238, Percent_Identity=23.109243697479, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1786890, Length=249, Percent_Identity=43.7751004016064, Blast_Score=231, Evalue=4e-62,
Organism=Caenorhabditis elegans, GI17562356, Length=258, Percent_Identity=29.4573643410853, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI193210059, Length=255, Percent_Identity=29.8039215686275, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562458, Length=293, Percent_Identity=26.2798634812287, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560956, Length=293, Percent_Identity=26.2798634812287, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17558880, Length=269, Percent_Identity=26.0223048327138, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI86563050, Length=246, Percent_Identity=30.0813008130081, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71984613, Length=265, Percent_Identity=27.9245283018868, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17557870, Length=269, Percent_Identity=27.1375464684015, Blast_Score=77, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6319965, Length=236, Percent_Identity=26.6949152542373, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24666141, Length=303, Percent_Identity=28.0528052805281, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24656326, Length=252, Percent_Identity=26.984126984127, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI22026920, Length=252, Percent_Identity=25.7936507936508, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24656330, Length=250, Percent_Identity=28.8, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24666137, Length=259, Percent_Identity=26.6409266409266, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19920940, Length=256, Percent_Identity=26.5625, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 29046; Mature: 28915

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAMTTRPVETWLTDMDGVLVHEEVPIPGAQEFIEALKASQRRFLVLTNNSIFTPRDLRA
CCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH
RLLGSGIDVPEEAIWTSALATAQFLDDQRPRGTAYVVGEAGLTTALHDIGYVMTDRDPDY
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCCE
VVLGETRTYSFEAITRAIRLVAAGARFIATNPDASGPSQQGMLPATGSVAALISTATGRR
EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
PYFIGKPNPLMMRSALNRLEAHSETTVMVGDRMDTDIISGLEAGLRTILVTTGSTRPEQV
CEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCEEEEEECCCCCCCCC
STFPYRPTRVVDSVADLLELVDPRPDAG
CCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AAMTTRPVETWLTDMDGVLVHEEVPIPGAQEFIEALKASQRRFLVLTNNSIFTPRDLRA
CCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH
RLLGSGIDVPEEAIWTSALATAQFLDDQRPRGTAYVVGEAGLTTALHDIGYVMTDRDPDY
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCCE
VVLGETRTYSFEAITRAIRLVAAGARFIATNPDASGPSQQGMLPATGSVAALISTATGRR
EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
PYFIGKPNPLMMRSALNRLEAHSETTVMVGDRMDTDIISGLEAGLRTILVTTGSTRPEQV
CEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCEEEEEECCCCCCCCC
STFPYRPTRVVDSVADLLELVDPRPDAG
CCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]