| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119715408
Identifier: 119715408
GI number: 119715408
Start: 1245549
End: 1246484
Strand: Direct
Name: 119715408
Synonym: Noca_1172
Alternate gene names: NA
Gene position: 1245549-1246484 (Clockwise)
Preceding gene: 119715407
Following gene: 119715409
Centisome position: 24.98
GC content: 69.66
Gene sequence:
>936_bases GTGCCGGACGCGATCATCACCTGCGCCCCCACCGGGGCGATCCACACGCCCTCCATGTCCCCGTACCTTCCGGTGACGCC CCATGAGATCGCCGCAGCGGCGCTCGCGGCCGCCGACGCCGGTGCCGCGATCGTGCACCTGCACGTCCGTGACCCCGACG ACGGGCACCCCGTCCAGGACACGGGGCTGTTCAGGGAGCTGCTGGCCGAGATCCAGGGCAAGTCCGACGTCGTCATCAAC CTCACCACGGGCGGCAGCCCGCACATGACGGTCGAGGAACGGATCGAGCCGGCGATCGCGCTGGCGCCCGAGCTTGCCTC GTTGAACATGGGCAGCATGAACATGGGCCTGTTCCCCATGCTGGATCGGTTCCCAGATCTCGACCACGACTGGGAGAGAC GGCACCTCGGGAACAAGGACCTCGTCTTCAAGAACACCTTCGCAGACATCGAGCGGATCCTGAGGACGTGCGGAGACCAG GGGACCCGTTTCGAGTTCGAGTGCTACGACACCGCGCACCTGTACAACCTGGCGCACTTCCTCGACCGGGGACTGGTGGA GCCGCCGCTGTTCATCCAGACGGTGGTCGGGCTGCTCGGTGGCATCGGAGCCGATGCGGAGGACCTGCTGCACCTGCGGC GGACCGCCACTCGTCTCTTCGGCGACCAGTTCGAGTGGTCCACCCTCGGGGCCGGTGCGGCCCAGATCCGGGTGGGAACG ATCGCCCTGGCCCTCGGTGCCAATGCGCGGGTCGGCCTCGAGGACTCGCTGTGGGACGGCCCCGGCAGGCTCGCCGAGTC GAGCCGGGCACAGGTAGAGCGTCTCCGGGCGGCGGCGGCGGTCCTCTACCGCGACATCGCGACCCCGTCCGAGGCGCGCC GCCGACTCGCGCTCCGGTCGGCCGAGCGGAGCAGCGGTCCGGGAGGAGAGTCGTGA
Upstream 100 bases:
>100_bases TGGTCACCGGCTACCAGTTGTCGGTCGGGTCCGGCTCGGTCGGCATCGAGGACGTCGCGCCCGCGACGTCGTGAAGACAG TTCGTCGAGAAGGAGGTTCC
Downstream 100 bases:
>100_bases GAACATGGGGTGTGCGTGAGACGTCCGAGGAGGAACGCCCGTGATCAACGGGCACGGCGTCGAGTCGGCAATCCGCGGCG AGCTGCTCTCGACCTCGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MPDAIITCAPTGAIHTPSMSPYLPVTPHEIAAAALAAADAGAAIVHLHVRDPDDGHPVQDTGLFRELLAEIQGKSDVVIN LTTGGSPHMTVEERIEPAIALAPELASLNMGSMNMGLFPMLDRFPDLDHDWERRHLGNKDLVFKNTFADIERILRTCGDQ GTRFEFECYDTAHLYNLAHFLDRGLVEPPLFIQTVVGLLGGIGADAEDLLHLRRTATRLFGDQFEWSTLGAGAAQIRVGT IALALGANARVGLEDSLWDGPGRLAESSRAQVERLRAAAAVLYRDIATPSEARRRLALRSAERSSGPGGES
Sequences:
>Translated_311_residues MPDAIITCAPTGAIHTPSMSPYLPVTPHEIAAAALAAADAGAAIVHLHVRDPDDGHPVQDTGLFRELLAEIQGKSDVVIN LTTGGSPHMTVEERIEPAIALAPELASLNMGSMNMGLFPMLDRFPDLDHDWERRHLGNKDLVFKNTFADIERILRTCGDQ GTRFEFECYDTAHLYNLAHFLDRGLVEPPLFIQTVVGLLGGIGADAEDLLHLRRTATRLFGDQFEWSTLGAGAAQIRVGT IALALGANARVGLEDSLWDGPGRLAESSRAQVERLRAAAAVLYRDIATPSEARRRLALRSAERSSGPGGES >Mature_310_residues PDAIITCAPTGAIHTPSMSPYLPVTPHEIAAAALAAADAGAAIVHLHVRDPDDGHPVQDTGLFRELLAEIQGKSDVVINL TTGGSPHMTVEERIEPAIALAPELASLNMGSMNMGLFPMLDRFPDLDHDWERRHLGNKDLVFKNTFADIERILRTCGDQG TRFEFECYDTAHLYNLAHFLDRGLVEPPLFIQTVVGLLGGIGADAEDLLHLRRTATRLFGDQFEWSTLGAGAAQIRVGTI ALALGANARVGLEDSLWDGPGRLAESSRAQVERLRAAAAVLYRDIATPSEARRRLALRSAERSSGPGGES
Specific function: Unknown
COG id: COG3246
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33554; Mature: 33423
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDAIITCAPTGAIHTPSMSPYLPVTPHEIAAAALAAADAGAAIVHLHVRDPDDGHPVQD CCCCEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCH TGLFRELLAEIQGKSDVVINLTTGGSPHMTVEERIEPAIALAPELASLNMGSMNMGLFPM HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCHHHCCCHHHHCCCCCCCCCHHHH LDRFPDLDHDWERRHLGNKDLVFKNTFADIERILRTCGDQGTRFEFECYDTAHLYNLAHF HHHCCCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH LDRGLVEPPLFIQTVVGLLGGIGADAEDLLHLRRTATRLFGDQFEWSTLGAGAAQIRVGT HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCHHEEEEEE IALALGANARVGLEDSLWDGPGRLAESSRAQVERLRAAAAVLYRDIATPSEARRRLALRS EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH AERSSGPGGES HHCCCCCCCCC >Mature Secondary Structure PDAIITCAPTGAIHTPSMSPYLPVTPHEIAAAALAAADAGAAIVHLHVRDPDDGHPVQD CCCEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCH TGLFRELLAEIQGKSDVVINLTTGGSPHMTVEERIEPAIALAPELASLNMGSMNMGLFPM HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCHHHCCCHHHHCCCCCCCCCHHHH LDRFPDLDHDWERRHLGNKDLVFKNTFADIERILRTCGDQGTRFEFECYDTAHLYNLAHF HHHCCCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH LDRGLVEPPLFIQTVVGLLGGIGADAEDLLHLRRTATRLFGDQFEWSTLGAGAAQIRVGT HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCHHEEEEEE IALALGANARVGLEDSLWDGPGRLAESSRAQVERLRAAAAVLYRDIATPSEARRRLALRS EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH AERSSGPGGES HHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA