| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is traA [H]
Identifier: 119715340
GI number: 119715340
Start: 1161255
End: 1163873
Strand: Reverse
Name: traA [H]
Synonym: Noca_1102
Alternate gene names: 119715340
Gene position: 1163873-1161255 (Counterclockwise)
Preceding gene: 119715349
Following gene: 119715338
Centisome position: 23.34
GC content: 72.62
Gene sequence:
>2619_bases GTGCACGGCGGCGTGAAGTTCTACAACGGCGCGGCGAAGGCCGCGCGCGCCTACGTCGAGCGCGACTGTTCGCGTGCCGA TGACTACTACCTCGGCGAAGGCACCGGCGTCGCCGAGCGGCTCACCGCGACCCCGGCTGGCGTCGCGGGAGCTGGCTCGA TGGACGGCGACGAGTACGAGCAGTGGGTCGCCGGGATCGACATCGACACCGGGTGCAAGAAGGGTCGGGTCCGTGAGGAC GCGAACGCGCTGCGGTTCGTCGAGGTCACCGTCAACGGCCCGAAGACCTGGTCGTTGGCCGCTGCGCTGCACCCCGAGGT GTCCGAGGCGCTTGACGGAGCTCAGGATCGTGCTGCGGAACAGATCGTGGGGTGGCTCGCGCTGCACGCGACCACCCGGG TCGGGCCCCGCGGACGGCAAGTCCAGGTACCGGTCGAGCGGATCGAGGCGGCGGTGATCCGGCACTACACGTCGCGGGCA GGCGACCCGCACCGGCATCTGCACCTCCAGGTCAACGCTCGCGTGTTCGCAGCCGGCGCCTGGCGGGGCCTGCACTCGGT GGGTGTGCGCGACATGATCGAGGCGATCAACGGCATCGGGCATGCCGCGGTCGCCACCGACCCGGAGTTCCGGGCGGTCC TCGCCGCACGCGGCTTCACCCTGGACCCCGAGACCGGGGAGATCGAGCAGCTCGCGCCGTACGTCGGGGCGTTCAGCGCA CGGACCAGTCAGATCCACCGCAACATCGACCGGTACGAAGCTGAGTGGCGACGCGAGCATCCCGGCGAGGAACCGGGGCC GCGGCTGCGTGAGGCCTGGGACCGGCGGGCGTGGGCCGATGCGCGGCCGGACAAGGTCGTCCCCACGGGCGGCGCTGACC TGGTCGCACGATGGAACGACGAGCTGCGTGCCCTGGGTTACCGCGACCCAGCCGCCCCTGCCGTGCTGGAGACAACGCAG GTCGGCCGGATCGACCGCGACGGTGCCGCGGAGTGGGTCGTATCCCAGCTCGGGGCGAAGCGGTCGGCGTGGAACACCGC CGACATCCGCGGCAAGGTCGAGCTCCTGCTGGCCCAGACCAACCTGGTCACCACGCCCGCAGCGCGGATCGAGCTCGCCG AGGACGTGACCGCCCGCGCCGCCGCACGCTGTGTTCGGCTGCTCGCGACGCCCGACTTGCCCGAGCACGTCCGGTCGCTG ACCTCCCAGCAGGTGGTGAACGTCGAGGCTGACGTCGTCGGTCGCCTCGCTCGCCGTGCCGAGAAGCCCGCCAGGCGGGT CCGTCTTCAAGGTCGCGGATTGGTGCGGGTCGACCCCACCCAGGCCGCCGTCGTCGGTGCCCTGGCCGGTGACGGCCAGC TCGTGGTCGTGGAGGGCGCGGCCGGCGCCGGGAAGACCACGGCGCTGAGGGCGACTCGGGAGCTGCTGGCAAGACATGGG CACCGTCTCGTGGTGGTGACACCGACCTTGAAGGCCGCCGAGGTCGCCGCCGCAGAGACCGGCGCGGACGGGCGCTCCGC GGCCTGGCTGATCCACCAGCACGGCTGGCGCTGGGACGCCGACGGGCACTGGGCACGCCGACCCGACACCACGCCTGACG CGGCCGCGCGCCTGCGGCCAGGGGACCTGCTGCTGATCGACGAGGCGGGGATGCTGGACCAGGACACCGCCCGCGCGCTC CTCACGATCGCCGACGAGGCCGGGGCACGGGTCGCCCTCGTCGGCGACCGACACCAGCTCCCGGCGGTCGGCCGCGGAGG CGTGCTGGACCACGCGCTCGCGTGGTCCCACCCGACCTCGGTCGTATCGCTGCAGAAGGTGCACCGGTTCACCGACCCCG ACTACGCCGCACTCTCCCTGCGCATGCGCACCGGCAACCACCCGGCCGCGGTCTTCGACGCGCTCCACCGCCGCGGATCG ATCCTGATCCATCCCAGCGAGGCCGAACGCACCGCCGCCCTCGCCGAAGCGGGAGCGGCCGGCGACCTCGTCCTCGCCGA CACCCGCGAGCACGTGGCTAGCCTCAACGCCGCGATCCGCGACCAACGCCGCGCCGACCCCGCGCGCGACCCGGCGGAGT CGATGGTGACCGCTCGCGGCGAACGGATCGGGGTCGGGGACAGGGTCGCCACCCGACGCAACGACCCCGACCTCGGAGTC GCGAACCGGCAGACCTGGACCGCCATCGGCTTCGGCGAGGACGGCAGCCTTGTACTCCGCGGACGGGGACGCGACCGAGT GGTCCCGACGGAGTACGCGAACAGGTTCGTCGAGCTCGCCTACGCCACCACCGTCCACGGAGCACAAGGCGAGACCGTCG ACCGAGCACACGTCGCCATCGGCGACACCACCGGCGCCGCCGCAGCCTACGTCGCAATGACCAGAGGCCGACTCGACAAC ACCGCGCACCTGGTGGCCGAGTCCGTTGAGGACGCCCGCAAGCTGTGGGTCGAGGTCTTCGGCCGGGACCGCGCCGACCT CGGCCCGGCCCACGCGAAGCGGCAGGCGATCGAGGCGGTCGATCGCTACGGCACCCAGAAGCGTCGCCTGTCACGGCAGG AGACGGTGGAGGAACCGCGTCGACCGGCCCCGGCATCCGGCGGCGGGATCGGCATCTGA
Upstream 100 bases:
>100_bases TACGAAGGTTCGTAGATGGGTCGCCCGTGATCGGGCGGCCCACGCGGCATTTCTAGGGGTCCGTTGGTTATCGACGGACG TCGTGGAGGCGGTGGTCCGG
Downstream 100 bases:
>100_bases GGTTAGTGATGCCGCTTGCGCCGGCGGACCGGCCGCCACTCGACGCCCATCTCTCCTGCGATCCAGGCGCTGAATCCGGC CGGGTCGCGCGGCTGCATGT
Product: exonuclease V subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 872; Mature: 872
Protein sequence:
>872_residues MHGGVKFYNGAAKAARAYVERDCSRADDYYLGEGTGVAERLTATPAGVAGAGSMDGDEYEQWVAGIDIDTGCKKGRVRED ANALRFVEVTVNGPKTWSLAAALHPEVSEALDGAQDRAAEQIVGWLALHATTRVGPRGRQVQVPVERIEAAVIRHYTSRA GDPHRHLHLQVNARVFAAGAWRGLHSVGVRDMIEAINGIGHAAVATDPEFRAVLAARGFTLDPETGEIEQLAPYVGAFSA RTSQIHRNIDRYEAEWRREHPGEEPGPRLREAWDRRAWADARPDKVVPTGGADLVARWNDELRALGYRDPAAPAVLETTQ VGRIDRDGAAEWVVSQLGAKRSAWNTADIRGKVELLLAQTNLVTTPAARIELAEDVTARAAARCVRLLATPDLPEHVRSL TSQQVVNVEADVVGRLARRAEKPARRVRLQGRGLVRVDPTQAAVVGALAGDGQLVVVEGAAGAGKTTALRATRELLARHG HRLVVVTPTLKAAEVAAAETGADGRSAAWLIHQHGWRWDADGHWARRPDTTPDAAARLRPGDLLLIDEAGMLDQDTARAL LTIADEAGARVALVGDRHQLPAVGRGGVLDHALAWSHPTSVVSLQKVHRFTDPDYAALSLRMRTGNHPAAVFDALHRRGS ILIHPSEAERTAALAEAGAAGDLVLADTREHVASLNAAIRDQRRADPARDPAESMVTARGERIGVGDRVATRRNDPDLGV ANRQTWTAIGFGEDGSLVLRGRGRDRVVPTEYANRFVELAYATTVHGAQGETVDRAHVAIGDTTGAAAAYVAMTRGRLDN TAHLVAESVEDARKLWVEVFGRDRADLGPAHAKRQAIEAVDRYGTQKRRLSRQETVEEPRRPAPASGGGIGI
Sequences:
>Translated_872_residues MHGGVKFYNGAAKAARAYVERDCSRADDYYLGEGTGVAERLTATPAGVAGAGSMDGDEYEQWVAGIDIDTGCKKGRVRED ANALRFVEVTVNGPKTWSLAAALHPEVSEALDGAQDRAAEQIVGWLALHATTRVGPRGRQVQVPVERIEAAVIRHYTSRA GDPHRHLHLQVNARVFAAGAWRGLHSVGVRDMIEAINGIGHAAVATDPEFRAVLAARGFTLDPETGEIEQLAPYVGAFSA RTSQIHRNIDRYEAEWRREHPGEEPGPRLREAWDRRAWADARPDKVVPTGGADLVARWNDELRALGYRDPAAPAVLETTQ VGRIDRDGAAEWVVSQLGAKRSAWNTADIRGKVELLLAQTNLVTTPAARIELAEDVTARAAARCVRLLATPDLPEHVRSL TSQQVVNVEADVVGRLARRAEKPARRVRLQGRGLVRVDPTQAAVVGALAGDGQLVVVEGAAGAGKTTALRATRELLARHG HRLVVVTPTLKAAEVAAAETGADGRSAAWLIHQHGWRWDADGHWARRPDTTPDAAARLRPGDLLLIDEAGMLDQDTARAL LTIADEAGARVALVGDRHQLPAVGRGGVLDHALAWSHPTSVVSLQKVHRFTDPDYAALSLRMRTGNHPAAVFDALHRRGS ILIHPSEAERTAALAEAGAAGDLVLADTREHVASLNAAIRDQRRADPARDPAESMVTARGERIGVGDRVATRRNDPDLGV ANRQTWTAIGFGEDGSLVLRGRGRDRVVPTEYANRFVELAYATTVHGAQGETVDRAHVAIGDTTGAAAAYVAMTRGRLDN TAHLVAESVEDARKLWVEVFGRDRADLGPAHAKRQAIEAVDRYGTQKRRLSRQETVEEPRRPAPASGGGIGI >Mature_872_residues MHGGVKFYNGAAKAARAYVERDCSRADDYYLGEGTGVAERLTATPAGVAGAGSMDGDEYEQWVAGIDIDTGCKKGRVRED ANALRFVEVTVNGPKTWSLAAALHPEVSEALDGAQDRAAEQIVGWLALHATTRVGPRGRQVQVPVERIEAAVIRHYTSRA GDPHRHLHLQVNARVFAAGAWRGLHSVGVRDMIEAINGIGHAAVATDPEFRAVLAARGFTLDPETGEIEQLAPYVGAFSA RTSQIHRNIDRYEAEWRREHPGEEPGPRLREAWDRRAWADARPDKVVPTGGADLVARWNDELRALGYRDPAAPAVLETTQ VGRIDRDGAAEWVVSQLGAKRSAWNTADIRGKVELLLAQTNLVTTPAARIELAEDVTARAAARCVRLLATPDLPEHVRSL TSQQVVNVEADVVGRLARRAEKPARRVRLQGRGLVRVDPTQAAVVGALAGDGQLVVVEGAAGAGKTTALRATRELLARHG HRLVVVTPTLKAAEVAAAETGADGRSAAWLIHQHGWRWDADGHWARRPDTTPDAAARLRPGDLLLIDEAGMLDQDTARAL LTIADEAGARVALVGDRHQLPAVGRGGVLDHALAWSHPTSVVSLQKVHRFTDPDYAALSLRMRTGNHPAAVFDALHRRGS ILIHPSEAERTAALAEAGAAGDLVLADTREHVASLNAAIRDQRRADPARDPAESMVTARGERIGVGDRVATRRNDPDLGV ANRQTWTAIGFGEDGSLVLRGRGRDRVVPTEYANRFVELAYATTVHGAQGETVDRAHVAIGDTTGAAAAYVAMTRGRLDN TAHLVAESVEDARKLWVEVFGRDRADLGPAHAKRQAIEAVDRYGTQKRRLSRQETVEEPRRPAPASGGGIGI
Specific function: Unknown
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mobA/mobL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000606 - InterPro: IPR005053 - InterPro: IPR014136 [H]
Pfam domain/function: PF03389 MobA_MobL; PF01443 Viral_helicase1 [H]
EC number: NA
Molecular weight: Translated: 93919; Mature: 93919
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHGGVKFYNGAAKAARAYVERDCSRADDYYLGEGTGVAERLTATPAGVAGAGSMDGDEYE CCCCCEEECCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCCCHHHH QWVAGIDIDTGCKKGRVREDANALRFVEVTVNGPKTWSLAAALHPEVSEALDGAQDRAAE HHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCHHHHHHCCHHHHHHH QIVGWLALHATTRVGPRGRQVQVPVERIEAAVIRHYTSRAGDPHRHLHLQVNARVFAAGA HHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEHH WRGLHSVGVRDMIEAINGIGHAAVATDPEFRAVLAARGFTLDPETGEIEQLAPYVGAFSA HHHHHHCCHHHHHHHHHCCCCCEECCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH RTSQIHRNIDRYEAEWRREHPGEEPGPRLREAWDRRAWADARPDKVVPTGGADLVARWND HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCH ELRALGYRDPAAPAVLETTQVGRIDRDGAAEWVVSQLGAKRSAWNTADIRGKVELLLAQT HHHHCCCCCCCCCHHEEHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEC NLVTTPAARIELAEDVTARAAARCVRLLATPDLPEHVRSLTSQQVVNVEADVVGRLARRA CEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCHHHHHHHHHHHH EKPARRVRLQGRGLVRVDPTQAAVVGALAGDGQLVVVEGAAGAGKTTALRATRELLARHG HCHHHHHEECCCCEEEECCCHHEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC HRLVVVTPTLKAAEVAAAETGADGRSAAWLIHQHGWRWDADGHWARRPDTTPDAAARLRP CEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCHHHHCCC GDLLLIDEAGMLDQDTARALLTIADEAGARVALVGDRHQLPAVGRGGVLDHALAWSHPTS CCEEEEECCCCCCCHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCHH VVSLQKVHRFTDPDYAALSLRMRTGNHPAAVFDALHRRGSILIHPSEAERTAALAEAGAA HHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCC GDLVLADTREHVASLNAAIRDQRRADPARDPAESMVTARGERIGVGDRVATRRNDPDLGV CCEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC ANRQTWTAIGFGEDGSLVLRGRGRDRVVPTEYANRFVELAYATTVHGAQGETVDRAHVAI CCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEEEE GDTTGAAAAYVAMTRGRLDNTAHLVAESVEDARKLWVEVFGRDRADLGPAHAKRQAIEAV CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH DRYGTQKRRLSRQETVEEPRRPAPASGGGIGI HHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MHGGVKFYNGAAKAARAYVERDCSRADDYYLGEGTGVAERLTATPAGVAGAGSMDGDEYE CCCCCEEECCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCCCHHHH QWVAGIDIDTGCKKGRVREDANALRFVEVTVNGPKTWSLAAALHPEVSEALDGAQDRAAE HHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCHHHHHHCCHHHHHHH QIVGWLALHATTRVGPRGRQVQVPVERIEAAVIRHYTSRAGDPHRHLHLQVNARVFAAGA HHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEHH WRGLHSVGVRDMIEAINGIGHAAVATDPEFRAVLAARGFTLDPETGEIEQLAPYVGAFSA HHHHHHCCHHHHHHHHHCCCCCEECCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH RTSQIHRNIDRYEAEWRREHPGEEPGPRLREAWDRRAWADARPDKVVPTGGADLVARWND HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCH ELRALGYRDPAAPAVLETTQVGRIDRDGAAEWVVSQLGAKRSAWNTADIRGKVELLLAQT HHHHCCCCCCCCCHHEEHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEC NLVTTPAARIELAEDVTARAAARCVRLLATPDLPEHVRSLTSQQVVNVEADVVGRLARRA CEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCHHHHHHHHHHHH EKPARRVRLQGRGLVRVDPTQAAVVGALAGDGQLVVVEGAAGAGKTTALRATRELLARHG HCHHHHHEECCCCEEEECCCHHEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC HRLVVVTPTLKAAEVAAAETGADGRSAAWLIHQHGWRWDADGHWARRPDTTPDAAARLRP CEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCHHHHCCC GDLLLIDEAGMLDQDTARALLTIADEAGARVALVGDRHQLPAVGRGGVLDHALAWSHPTS CCEEEEECCCCCCCHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCHH VVSLQKVHRFTDPDYAALSLRMRTGNHPAAVFDALHRRGSILIHPSEAERTAALAEAGAA HHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCC GDLVLADTREHVASLNAAIRDQRRADPARDPAESMVTARGERIGVGDRVATRRNDPDLGV CCEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC ANRQTWTAIGFGEDGSLVLRGRGRDRVVPTEYANRFVELAYATTVHGAQGETVDRAHVAI CCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEEEE GDTTGAAAAYVAMTRGRLDNTAHLVAESVEDARKLWVEVFGRDRADLGPAHAKRQAIEAV CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH DRYGTQKRRLSRQETVEEPRRPAPASGGGIGI HHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]