| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714955
Identifier: 119714955
GI number: 119714955
Start: 746881
End: 748155
Strand: Direct
Name: 119714955
Synonym: Noca_0708
Alternate gene names: NA
Gene position: 746881-748155 (Clockwise)
Preceding gene: 119714954
Following gene: 119714956
Centisome position: 14.98
GC content: 68.47
Gene sequence:
>1275_bases ATGATCACTCGCCGCACCCGTCTGCAGCTGCTCGCCTTCGTCGCGATCACGCTCCTCGGTGTCAGCTTCGTCGGCGCCCG CTACGCGCGGCTCGACCGGATCTTCTTCGACGACCACTACACCGTCGTCGCGCACTTCCAGGACTCCGGTGGCATCTTCA CCGGCGGCGAGGTGTCCTACCGCGGCGTCCAGATCGGTCGGGTGGGTCAGCTCGAGCTGACCGACTCCGGCGTCGACGTC TACCTCGACATCGACAACGGCTGGGACGAGATCCCCGCGGACTCGCTCGCCGTCGTGGGCAACCGCTCCGCCGTGGGCGA GCAGTACGTCGAGCTCCAGCCGCAGGAGGACTCCGGGCCCTACCTCGGCGAGGACTCCCAGATCGCGATGGCCGACACCC GGATCCCGATCGCGACCCAGAAGCTGCTCACCGACATCTCCGACACGGTCGAGTCGGTCGACAAGCAGGCGCTGGCCACG ACCGTCCACGAGCTGGGCCAGGCCTTCGGCGGTACCGGCACGGACCTCCAGCGCATCATCGACACGGGCAACGCCTTCAT CAACGAAGCCAACGACAACTTCGACGTGACGACGGCGCTGATCCGTGACAGCAACACCGTGCTCACCAGCCAGCTCGACA AGGCGAGCGCGCTGCGCACCTTCGCCCGCGAGCTGAGCCTGTTCAGCGGCTCGCTGGCCGGCTCCGACGCGGACCTGCGC AAGGTCATCGACAACGGCTCGGCCGCGGCGACGCAGCTGCGCACGTTCCTCGAGGACAACGAGGTCGACCTGGGGGAGCT GTTCAACAACCTGGTCACCACCGGCGACGTCGTCGTCAAGCACCTGCCCGGCATCGAGCAGATCCTGGCGATCTACCCCT ACGTCGTCGAGGGCGGCTTCACGGTCGTGTCGAAGTCGCCGGACACCGGCCTGTACGACGCCCACTTCGGCATGATCATC ACCGACAACCCCGTGTGCCACCACGGCTACGAGGGCACCGACACCCGACCTCCGCAGGACGGCAGCAACCGGCCGATGAA CACCAAGGCGGGCTGCCGGGAGCCGGCGACGATGAGCAACCCGCGCGGTCCGCAGAACCTCCCCCGGGCGGGCGCGGCCT ACCGCGCGCCGGTCGCGTCGTACGACCCCGACACCGGCAAGGTGCACTGGGGCGCGAAGATCGACCCCGTGCTGGCCCCG ACCGGTACGTTGGCCCCCCAAGCGTTCGGAGAGGAGTCGTGGAAGTGGCTGTTCCTCCAGCCCCTGGTGCCGTGA
Upstream 100 bases:
>100_bases TCGGCCCGACGACCTCGGCGCCCGGCCCGACCCTGGGCCAGCTCAGCCGCCTGTTCGACCCGGCCCTCGTCCGCCTCCTC GTCCCGGGGATGGTGACCCG
Downstream 100 bases:
>100_bases CCACCGGGACTGATGAGACGCCGCGTTCCGCCACCTTCCGGCTCGTGCTGCTCGTCGTCCTCGTGATCGTGCTGCTCGCC TCGGCCGGCGCACTCGCCTG
Product: virulence factor Mce family protein
Products: NA
Alternate protein names: Mce Family Protein; Secreted Protein; MCE Family Protein; MCE-Family F; Mce Family F; MCE-Family Protein; MCE-Family D; Mce Family D; Mce-Related Protein; MCE-Family; Mce-Family F; Mce Related Protein; Mammalian Cell Entry Related Domain-Containing Protein; MCE-Family C; Mammalian Cell Entry Related Domain Protein; Mce Family; Mce Family A
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MITRRTRLQLLAFVAITLLGVSFVGARYARLDRIFFDDHYTVVAHFQDSGGIFTGGEVSYRGVQIGRVGQLELTDSGVDV YLDIDNGWDEIPADSLAVVGNRSAVGEQYVELQPQEDSGPYLGEDSQIAMADTRIPIATQKLLTDISDTVESVDKQALAT TVHELGQAFGGTGTDLQRIIDTGNAFINEANDNFDVTTALIRDSNTVLTSQLDKASALRTFARELSLFSGSLAGSDADLR KVIDNGSAAATQLRTFLEDNEVDLGELFNNLVTTGDVVVKHLPGIEQILAIYPYVVEGGFTVVSKSPDTGLYDAHFGMII TDNPVCHHGYEGTDTRPPQDGSNRPMNTKAGCREPATMSNPRGPQNLPRAGAAYRAPVASYDPDTGKVHWGAKIDPVLAP TGTLAPQAFGEESWKWLFLQPLVP
Sequences:
>Translated_424_residues MITRRTRLQLLAFVAITLLGVSFVGARYARLDRIFFDDHYTVVAHFQDSGGIFTGGEVSYRGVQIGRVGQLELTDSGVDV YLDIDNGWDEIPADSLAVVGNRSAVGEQYVELQPQEDSGPYLGEDSQIAMADTRIPIATQKLLTDISDTVESVDKQALAT TVHELGQAFGGTGTDLQRIIDTGNAFINEANDNFDVTTALIRDSNTVLTSQLDKASALRTFARELSLFSGSLAGSDADLR KVIDNGSAAATQLRTFLEDNEVDLGELFNNLVTTGDVVVKHLPGIEQILAIYPYVVEGGFTVVSKSPDTGLYDAHFGMII TDNPVCHHGYEGTDTRPPQDGSNRPMNTKAGCREPATMSNPRGPQNLPRAGAAYRAPVASYDPDTGKVHWGAKIDPVLAP TGTLAPQAFGEESWKWLFLQPLVP >Mature_424_residues MITRRTRLQLLAFVAITLLGVSFVGARYARLDRIFFDDHYTVVAHFQDSGGIFTGGEVSYRGVQIGRVGQLELTDSGVDV YLDIDNGWDEIPADSLAVVGNRSAVGEQYVELQPQEDSGPYLGEDSQIAMADTRIPIATQKLLTDISDTVESVDKQALAT TVHELGQAFGGTGTDLQRIIDTGNAFINEANDNFDVTTALIRDSNTVLTSQLDKASALRTFARELSLFSGSLAGSDADLR KVIDNGSAAATQLRTFLEDNEVDLGELFNNLVTTGDVVVKHLPGIEQILAIYPYVVEGGFTVVSKSPDTGLYDAHFGMII TDNPVCHHGYEGTDTRPPQDGSNRPMNTKAGCREPATMSNPRGPQNLPRAGAAYRAPVASYDPDTGKVHWGAKIDPVLAP TGTLAPQAFGEESWKWLFLQPLVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45807; Mature: 45807
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITRRTRLQLLAFVAITLLGVSFVGARYARLDRIFFDDHYTVVAHFQDSGGIFTGGEVSY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEEECCCCEEECCCEEE RGVQIGRVGQLELTDSGVDVYLDIDNGWDEIPADSLAVVGNRSAVGEQYVELQPQEDSGP CEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCHHHCCHHEEECCCCCCCC YLGEDSQIAMADTRIPIATQKLLTDISDTVESVDKQALATTVHELGQAFGGTGTDLQRII CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH DTGNAFINEANDNFDVTTALIRDSNTVLTSQLDKASALRTFARELSLFSGSLAGSDADLR HCCCCEEECCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH KVIDNGSAAATQLRTFLEDNEVDLGELFNNLVTTGDVVVKHLPGIEQILAIYPYVVEGGF HHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCE TVVSKSPDTGLYDAHFGMIITDNPVCHHGYEGTDTRPPQDGSNRPMNTKAGCREPATMSN EEEECCCCCCEEECCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRGPQNLPRAGAAYRAPVASYDPDTGKVHWGAKIDPVLAPTGTLAPQAFGEESWKWLFLQ CCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCHHCCCCCCEEEEEE PLVP CCCC >Mature Secondary Structure MITRRTRLQLLAFVAITLLGVSFVGARYARLDRIFFDDHYTVVAHFQDSGGIFTGGEVSY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEEECCCCEEECCCEEE RGVQIGRVGQLELTDSGVDVYLDIDNGWDEIPADSLAVVGNRSAVGEQYVELQPQEDSGP CEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCHHHCCHHEEECCCCCCCC YLGEDSQIAMADTRIPIATQKLLTDISDTVESVDKQALATTVHELGQAFGGTGTDLQRII CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH DTGNAFINEANDNFDVTTALIRDSNTVLTSQLDKASALRTFARELSLFSGSLAGSDADLR HCCCCEEECCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH KVIDNGSAAATQLRTFLEDNEVDLGELFNNLVTTGDVVVKHLPGIEQILAIYPYVVEGGF HHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCE TVVSKSPDTGLYDAHFGMIITDNPVCHHGYEGTDTRPPQDGSNRPMNTKAGCREPATMSN EEEECCCCCCEEECCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRGPQNLPRAGAAYRAPVASYDPDTGKVHWGAKIDPVLAPTGTLAPQAFGEESWKWLFLQ CCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCHHCCCCCCEEEEEE PLVP CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA