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The map label for this gene is xerD [C]

Identifier: 119714827

GI number: 119714827

Start: 592798

End: 593883

Strand: Direct

Name: xerD [C]

Synonym: Noca_0563

Alternate gene names: 119714827

Gene position: 592798-593883 (Clockwise)

Preceding gene: 119714826

Following gene: 119714835

Centisome position: 11.89

GC content: 69.89

Gene sequence:

>1086_bases
ATGGCCAGCATCAAGAAGCGCGACAACGGCAAGTGGCGGGCTCGCTATCGCGACGAGGGCGGCAAGGAGCACGCGCGGCA
CTTCGCGCGCAAGACCGACGCCCAGGACTGGCTCGACGAGGAGACGGCCGGGCTCGTGCGCGGCGACTGGATCGACCCGC
GCCACGGCAAGATCACGTTCGCTCAGTGGTTCGCGGACTGGTCGGCCCGACAGGTGTGGGCGGACGGCACGCTCGAGGCG
GCGGAGCAGGCGGCGGCGTCCGTGACGTTCGGCAACATCGCCATGCGGAAGATCCTCCGGTCCCACGTCGAGGCCTGGGT
CAAGTCGATGAGCACGACCCTCGCCGCGAGCACGACCCGCATGCGCTACAACTACGTCCACATGGCCTTCCGCGCCGCGG
TGCGCGACAAGGTGATCCGGGAGGCGCCCTCCGATGGGGTCGCACTCCCGAAGATCCCCAGGGCTGAGGTCACGATGCTG
ATCCCGACGCCGGAGCAGGTCGCGGCCGCGCGGGTGTCCTGTCCCGATTCGGCGTTCGTCGGGTTCATCGCGGTGTGCGC
CTACGCCGGCCTCCGGCTGGGCGAGGCGGCCGGGCTGCAGGTCGGCGACGTCGACTTCCTCCGACGTGAGATCCGCGTGC
GCCGGCAGGTGCAGGGGCAGACCGTAGCCACGGCCAAGGTCGTCCCGCCGAAGGCTGGGTCGGCCCGGACGGTGTACGTC
GACGACAGCCTCGTGAAGCTGCTGTCGACGCACGTCCGCGACTACGGCACCTGGGGCGACGAGGGTTGGCTGTTCGGCAT
GGGCACGCTGCTGAACCGGAACTCGGCCGGTCACCTGTGGCGACAGACCCGGCAGGGTGTCGGCCTGGACGCCTTCACGC
TCCACGACCTGCGCCATTTCTACGCCTCCGGCCTGATCGCGGCGGGATGCGACGTCGTGACGGTGCAGCACGCGCTCGGG
CACTCGTCGCCGACGATCACCCTCAACACCTACTCGCACCTGTGGCCCAAGGCCGAGGACCGAACGCGAGATGCCGCGGC
GTCACTCTGGCGTCCTGCGACCCGTCAAGGGAAGGCTGCGCAATGA

Upstream 100 bases:

>100_bases
AGTCCGTGTACTGCGATCGGCCCGAATGCAAGCGAGAGCAGCAGCGACGCAACCAAGCGGCATGGCGGGCGAAGAAGGCG
GCGGAGAGGGGCGGGTCCTG

Downstream 100 bases:

>100_bases
TGACTGTTCCCCTCGTCTTCACGCTCGAGGAGATGCTGCCTCACTTCGTCGACCCCGACCGTCGGTGCGACCCGACCGCC
GAGGAGGTCGAGATTGCTGG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MASIKKRDNGKWRARYRDEGGKEHARHFARKTDAQDWLDEETAGLVRGDWIDPRHGKITFAQWFADWSARQVWADGTLEA
AEQAAASVTFGNIAMRKILRSHVEAWVKSMSTTLAASTTRMRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTML
IPTPEQVAAARVSCPDSAFVGFIAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRRQVQGQTVATAKVVPPKAGSARTVYV
DDSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHLWRQTRQGVGLDAFTLHDLRHFYASGLIAAGCDVVTVQHALG
HSSPTITLNTYSHLWPKAEDRTRDAAASLWRPATRQGKAAQ

Sequences:

>Translated_361_residues
MASIKKRDNGKWRARYRDEGGKEHARHFARKTDAQDWLDEETAGLVRGDWIDPRHGKITFAQWFADWSARQVWADGTLEA
AEQAAASVTFGNIAMRKILRSHVEAWVKSMSTTLAASTTRMRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTML
IPTPEQVAAARVSCPDSAFVGFIAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRRQVQGQTVATAKVVPPKAGSARTVYV
DDSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHLWRQTRQGVGLDAFTLHDLRHFYASGLIAAGCDVVTVQHALG
HSSPTITLNTYSHLWPKAEDRTRDAAASLWRPATRQGKAAQ
>Mature_360_residues
ASIKKRDNGKWRARYRDEGGKEHARHFARKTDAQDWLDEETAGLVRGDWIDPRHGKITFAQWFADWSARQVWADGTLEAA
EQAAASVTFGNIAMRKILRSHVEAWVKSMSTTLAASTTRMRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTMLI
PTPEQVAAARVSCPDSAFVGFIAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRRQVQGQTVATAKVVPPKAGSARTVYVD
DSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHLWRQTRQGVGLDAFTLHDLRHFYASGLIAAGCDVVTVQHALGH
SSPTITLNTYSHLWPKAEDRTRDAAASLWRPATRQGKAAQ

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39962; Mature: 39830

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIKKRDNGKWRARYRDEGGKEHARHFARKTDAQDWLDEETAGLVRGDWIDPRHGKITF
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCEEEH
AQWFADWSARQVWADGTLEAAEQAAASVTFGNIAMRKILRSHVEAWVKSMSTTLAASTTR
HHHHHCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTMLIPTPEQVAAARVSCPDSAFV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCHHHH
GFIAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRRQVQGQTVATAKVVPPKAGSARTVYV
HHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEE
DDSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHLWRQTRQGVGLDAFTLHDLRHF
CHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
YASGLIAAGCDVVTVQHALGHSSPTITLNTYSHLWPKAEDRTRDAAASLWRPATRQGKAA
HHCCHHHCCCHHEEHHHHHCCCCCEEEEECHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
Q
C
>Mature Secondary Structure 
ASIKKRDNGKWRARYRDEGGKEHARHFARKTDAQDWLDEETAGLVRGDWIDPRHGKITF
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCEEEH
AQWFADWSARQVWADGTLEAAEQAAASVTFGNIAMRKILRSHVEAWVKSMSTTLAASTTR
HHHHHCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTMLIPTPEQVAAARVSCPDSAFV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCHHHH
GFIAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRRQVQGQTVATAKVVPPKAGSARTVYV
HHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEE
DDSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHLWRQTRQGVGLDAFTLHDLRHF
CHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
YASGLIAAGCDVVTVQHALGHSSPTITLNTYSHLWPKAEDRTRDAAASLWRPATRQGKAA
HHCCHHHCCCHHEEHHHHHCCCCCEEEEECHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]