| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714819
Identifier: 119714819
GI number: 119714819
Start: 587200
End: 588729
Strand: Reverse
Name: 119714819
Synonym: Noca_0555
Alternate gene names: NA
Gene position: 588729-587200 (Counterclockwise)
Preceding gene: 119714820
Following gene: 119714818
Centisome position: 11.81
GC content: 69.28
Gene sequence:
>1530_bases ATGAGGCTGCTTGACGACCCGGACGCCCTGGTCCAGCCGTCGTTCTACCACTGCCCGGACTACGTCGTGACGATCGGCCC CGAGGTCGCCGACCTGGTCCAGCTGTTCGGCCGCACCGCGAACCCGGAGCAGCGGCTTCTGCTCGACGGCTCGTTCGGCA TGGACCGCCGCGGTCGGCTCGCCGCTTTCGAGGTCTTCGTCGAGGCCGCGCGGCAGAACCTGAAGACCGGGTTCTTCGAG TTCCGGGCGCTCGGCAAGGCGCTGCTGCTGCACCGGCCGATGCAGATCTGGACCGCGCACAAGGAGTCCGCGACCGACCA GGCGTTGCTCGACCTCAAGCAGATGATCGAGGAGTCGGCCGAGCTCTCCAAGCGCGTGAAGCGGATCACTGAGGGCAAGG GCGGCAAGTCGATCGAGTTCACCAACCGGTGCACGATCGTGTTCCGGCCACGGACCGGTAAGGCCGGCCAGTCGATGTCC GCCGACGACGTCGACCTGGACGAGTACTTCGCCGTCGAGGCCAAGCACGAGGGCTCGCTGCTGCCGACGATGTCCACTCG GCCCAATGCCCAGGTGGGCGCCGCGTCGTCCGCGCCGCACCTCGGCAGCCACATGCAGCGCGCGTTGATGGCCCGCGGCA GGATGGCCGCCCTCGGTCTGCGCATCGAGCCCCGGCTGCTCTACGCCGAGTGGTCGCCGATCCGGGTGATCGGGGAGAAG CCCGACGGCTCACCGCGGTTCGGGCCGCCGCCGTGTGCGCAGCCGAAGTGCACGCACCGGCTCGGCGTGGAGGGCTGCAT CGCCGACGACCGCGAGGTCATCAAGCTGGCCAACCCCAGCGCCGGGCGGTCGAGCAAACCGGCGATCAGCTGGGAGTTCA TCGCCGACGAGCGGCGCAAGCTGTGCAGCCCCGAGGCGCCTGAGGAGTCCTTGGACGAGTACTTCAAGGAGCGGCTGAGC ATCGGGGTCGAGGAGGTTGGCCTCGAAGCGTCGATCTTCCCGACCTGGCCGGGGTTGAAGCAGGCGCCGCCGGCTCCGCT CGAGGTGCTCGCCCTGGGCGTGGCGTGCGACAACGACCAGACGGTGCTCTCGCTCGGAGCCGCGTGCAAGGGCCACGCGC ACACGCATCTGGCTGTCGTGGATCGCCGCGCGGCCACCGAGCGCAAGGGGTTCGCGGAGAACGTCGCGCGGATCCAGCGC GAGCGCAGTTGCGCGGTCCTGATCCGGGGTAAGAACTTCATGATCGACGACCTGATCGAGGCCGGCGTCACACTGCGCCT GGTCGACGCCGATGAGCGAGCACAGAGCCATGCCGACCTGGCCACCGCGATCGAGACCAACGCCCTCGAGCACGGCGACT ACCCCGAGCTCAACGCTGCGGTGGAGGTCGCACAGTGGCAGGTCCTCGACAACCGTCGCAGCCTCGACTCCCGCCGCGGC GAGATCAGCGCTCTCGAGTCTGTCGCGCTCGCGCTGCGCGGCGCAACGAAGCCCAACCCGACCGTCGAACCGTTCGCGAT CTGGGGCTGA
Upstream 100 bases:
>100_bases GCCTGATGGGCGAAGCCCGCGCCGAGGCCGCCCCCAAGCAGCGAGATGGTGCTGACGACGTGATGGCCCGGGTGGCCGCG AAGATTCAGGAGCTCGTTCG
Downstream 100 bases:
>100_bases AAGCCCACCCGAGGAAGGCCACCGACCATGAGCACGAACCCCCCGCCGCATCAGCCGTGCCCCGCAGCTTCGCCTACCGA TCAGGTGGTCGATGAGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Terminase; Phage Terminase Large Subunit
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRLAAFEVFVEAARQNLKTGFFE FRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESAELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMS ADDVDLDEYFAVEAKHEGSLLPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRKLCSPEAPEESLDEYFKERLS IGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQTVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQR ERSCAVLIRGKNFMIDDLIEAGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG EISALESVALALRGATKPNPTVEPFAIWG
Sequences:
>Translated_509_residues MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRLAAFEVFVEAARQNLKTGFFE FRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESAELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMS ADDVDLDEYFAVEAKHEGSLLPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRKLCSPEAPEESLDEYFKERLS IGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQTVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQR ERSCAVLIRGKNFMIDDLIEAGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG EISALESVALALRGATKPNPTVEPFAIWG >Mature_509_residues MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRLAAFEVFVEAARQNLKTGFFE FRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESAELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMS ADDVDLDEYFAVEAKHEGSLLPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRKLCSPEAPEESLDEYFKERLS IGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQTVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQR ERSCAVLIRGKNFMIDDLIEAGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG EISALESVALALRGATKPNPTVEPFAIWG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55863; Mature: 55863
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRL CCCCCCCHHHCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCH AAFEVFVEAARQNLKTGFFEFRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHH ELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMSADDVDLDEYFAVEAKHEGSL HHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHEEEEECCCCCC LPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECEEECCEEEEECCCCEEEEECC PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRK CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHH LCSPEAPEESLDEYFKERLSIGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQ HCCCCCCHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCCCCCCCHHHEEEEEEECCCC TVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQRERSCAVLIRGKNFMIDDLIE CEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH AGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC EISALESVALALRGATKPNPTVEPFAIWG HHHHHHHHHHHHHCCCCCCCCCCCEEECC >Mature Secondary Structure MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRL CCCCCCCHHHCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCH AAFEVFVEAARQNLKTGFFEFRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHH ELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMSADDVDLDEYFAVEAKHEGSL HHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHEEEEECCCCCC LPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECEEECCEEEEECCCCEEEEECC PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRK CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHH LCSPEAPEESLDEYFKERLSIGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQ HCCCCCCHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCCCCCCCHHHEEEEEEECCCC TVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQRERSCAVLIRGKNFMIDDLIE CEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH AGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC EISALESVALALRGATKPNPTVEPFAIWG HHHHHHHHHHHHHCCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA