Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

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The map label for this gene is 119714819

Identifier: 119714819

GI number: 119714819

Start: 587200

End: 588729

Strand: Reverse

Name: 119714819

Synonym: Noca_0555

Alternate gene names: NA

Gene position: 588729-587200 (Counterclockwise)

Preceding gene: 119714820

Following gene: 119714818

Centisome position: 11.81

GC content: 69.28

Gene sequence:

>1530_bases
ATGAGGCTGCTTGACGACCCGGACGCCCTGGTCCAGCCGTCGTTCTACCACTGCCCGGACTACGTCGTGACGATCGGCCC
CGAGGTCGCCGACCTGGTCCAGCTGTTCGGCCGCACCGCGAACCCGGAGCAGCGGCTTCTGCTCGACGGCTCGTTCGGCA
TGGACCGCCGCGGTCGGCTCGCCGCTTTCGAGGTCTTCGTCGAGGCCGCGCGGCAGAACCTGAAGACCGGGTTCTTCGAG
TTCCGGGCGCTCGGCAAGGCGCTGCTGCTGCACCGGCCGATGCAGATCTGGACCGCGCACAAGGAGTCCGCGACCGACCA
GGCGTTGCTCGACCTCAAGCAGATGATCGAGGAGTCGGCCGAGCTCTCCAAGCGCGTGAAGCGGATCACTGAGGGCAAGG
GCGGCAAGTCGATCGAGTTCACCAACCGGTGCACGATCGTGTTCCGGCCACGGACCGGTAAGGCCGGCCAGTCGATGTCC
GCCGACGACGTCGACCTGGACGAGTACTTCGCCGTCGAGGCCAAGCACGAGGGCTCGCTGCTGCCGACGATGTCCACTCG
GCCCAATGCCCAGGTGGGCGCCGCGTCGTCCGCGCCGCACCTCGGCAGCCACATGCAGCGCGCGTTGATGGCCCGCGGCA
GGATGGCCGCCCTCGGTCTGCGCATCGAGCCCCGGCTGCTCTACGCCGAGTGGTCGCCGATCCGGGTGATCGGGGAGAAG
CCCGACGGCTCACCGCGGTTCGGGCCGCCGCCGTGTGCGCAGCCGAAGTGCACGCACCGGCTCGGCGTGGAGGGCTGCAT
CGCCGACGACCGCGAGGTCATCAAGCTGGCCAACCCCAGCGCCGGGCGGTCGAGCAAACCGGCGATCAGCTGGGAGTTCA
TCGCCGACGAGCGGCGCAAGCTGTGCAGCCCCGAGGCGCCTGAGGAGTCCTTGGACGAGTACTTCAAGGAGCGGCTGAGC
ATCGGGGTCGAGGAGGTTGGCCTCGAAGCGTCGATCTTCCCGACCTGGCCGGGGTTGAAGCAGGCGCCGCCGGCTCCGCT
CGAGGTGCTCGCCCTGGGCGTGGCGTGCGACAACGACCAGACGGTGCTCTCGCTCGGAGCCGCGTGCAAGGGCCACGCGC
ACACGCATCTGGCTGTCGTGGATCGCCGCGCGGCCACCGAGCGCAAGGGGTTCGCGGAGAACGTCGCGCGGATCCAGCGC
GAGCGCAGTTGCGCGGTCCTGATCCGGGGTAAGAACTTCATGATCGACGACCTGATCGAGGCCGGCGTCACACTGCGCCT
GGTCGACGCCGATGAGCGAGCACAGAGCCATGCCGACCTGGCCACCGCGATCGAGACCAACGCCCTCGAGCACGGCGACT
ACCCCGAGCTCAACGCTGCGGTGGAGGTCGCACAGTGGCAGGTCCTCGACAACCGTCGCAGCCTCGACTCCCGCCGCGGC
GAGATCAGCGCTCTCGAGTCTGTCGCGCTCGCGCTGCGCGGCGCAACGAAGCCCAACCCGACCGTCGAACCGTTCGCGAT
CTGGGGCTGA

Upstream 100 bases:

>100_bases
GCCTGATGGGCGAAGCCCGCGCCGAGGCCGCCCCCAAGCAGCGAGATGGTGCTGACGACGTGATGGCCCGGGTGGCCGCG
AAGATTCAGGAGCTCGTTCG

Downstream 100 bases:

>100_bases
AAGCCCACCCGAGGAAGGCCACCGACCATGAGCACGAACCCCCCGCCGCATCAGCCGTGCCCCGCAGCTTCGCCTACCGA
TCAGGTGGTCGATGAGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Phage Terminase; Phage Terminase Large Subunit

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRLAAFEVFVEAARQNLKTGFFE
FRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESAELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMS
ADDVDLDEYFAVEAKHEGSLLPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK
PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRKLCSPEAPEESLDEYFKERLS
IGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQTVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQR
ERSCAVLIRGKNFMIDDLIEAGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG
EISALESVALALRGATKPNPTVEPFAIWG

Sequences:

>Translated_509_residues
MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRLAAFEVFVEAARQNLKTGFFE
FRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESAELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMS
ADDVDLDEYFAVEAKHEGSLLPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK
PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRKLCSPEAPEESLDEYFKERLS
IGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQTVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQR
ERSCAVLIRGKNFMIDDLIEAGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG
EISALESVALALRGATKPNPTVEPFAIWG
>Mature_509_residues
MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRLAAFEVFVEAARQNLKTGFFE
FRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESAELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMS
ADDVDLDEYFAVEAKHEGSLLPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK
PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRKLCSPEAPEESLDEYFKERLS
IGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQTVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQR
ERSCAVLIRGKNFMIDDLIEAGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG
EISALESVALALRGATKPNPTVEPFAIWG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55863; Mature: 55863

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRL
CCCCCCCHHHCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCH
AAFEVFVEAARQNLKTGFFEFRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
ELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMSADDVDLDEYFAVEAKHEGSL
HHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHEEEEECCCCCC
LPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECEEECCEEEEECCCCEEEEECC
PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRK
CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHH
LCSPEAPEESLDEYFKERLSIGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQ
HCCCCCCHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCCCCCCCHHHEEEEEEECCCC
TVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQRERSCAVLIRGKNFMIDDLIE
CEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
AGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EISALESVALALRGATKPNPTVEPFAIWG
HHHHHHHHHHHHHCCCCCCCCCCCEEECC
>Mature Secondary Structure
MRLLDDPDALVQPSFYHCPDYVVTIGPEVADLVQLFGRTANPEQRLLLDGSFGMDRRGRL
CCCCCCCHHHCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCH
AAFEVFVEAARQNLKTGFFEFRALGKALLLHRPMQIWTAHKESATDQALLDLKQMIEESA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
ELSKRVKRITEGKGGKSIEFTNRCTIVFRPRTGKAGQSMSADDVDLDEYFAVEAKHEGSL
HHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHEEEEECCCCCC
LPTMSTRPNAQVGAASSAPHLGSHMQRALMARGRMAALGLRIEPRLLYAEWSPIRVIGEK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECEEECCEEEEECCCCEEEEECC
PDGSPRFGPPPCAQPKCTHRLGVEGCIADDREVIKLANPSAGRSSKPAISWEFIADERRK
CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHH
LCSPEAPEESLDEYFKERLSIGVEEVGLEASIFPTWPGLKQAPPAPLEVLALGVACDNDQ
HCCCCCCHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCCCCCCCHHHEEEEEEECCCC
TVLSLGAACKGHAHTHLAVVDRRAATERKGFAENVARIQRERSCAVLIRGKNFMIDDLIE
CEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
AGVTLRLVDADERAQSHADLATAIETNALEHGDYPELNAAVEVAQWQVLDNRRSLDSRRG
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EISALESVALALRGATKPNPTVEPFAIWG
HHHHHHHHHHHHHCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA