| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119714738
Identifier: 119714738
GI number: 119714738
Start: 505707
End: 506477
Strand: Reverse
Name: 119714738
Synonym: Noca_0474
Alternate gene names: NA
Gene position: 506477-505707 (Counterclockwise)
Preceding gene: 119714746
Following gene: 119714737
Centisome position: 10.16
GC content: 70.17
Gene sequence:
>771_bases GTGCCCGAAGTCGATCTGGTCTTCCCCCGCGCCTACGTGGAGTTCGTGAACCCTGCCGACGAGACCGAGGTGCTGCGCTG CGACCTCACCTGGCTGACCTCGAGCTACACCTGCATCTTCGGGCGGGGGTGCCCGGGCATCTACGCCGATGCCCCGGACG TCGGGTGCTGCACGCTCGGCGCACACTTCGCCGACAAGGACGACGAGAAACGGGTCGCGGAGTACGTCGGGATGCTCGAC GAGGAGCTGTGGCAGCACAAGCCGCAGCGGCCCGACGGCAAGGTCCGCAAGCGGGACTGGATCGAGCTCGACGACGAGGG CGAGCGCAAGACCCGCACGATCGAGGTCGACGGGCAGCAGGCGTGCATCTTCCAGAACCGCCCGGACTTCAAGAACGGAG CCGGCTGCGCCCTGCACGCGCTGGCCTACGTGCTCGACAAGTTGCCGCTCGAGACCAAGCCGGACGTGTGCTGGCAGCTG CCGATCCGGCGCACCTTCCGCGACGTCACCCGCCAGGACGGCTCGACGTACACCGAGGTCTCGATCGGCGAGTACGACCG GCGCGGCTGGGGTCCGGGCGGGCACGACCTCGACTGGTACTGCTCGGGCAACACCGAGGCGCACGTCGGCGTGGAGCCGG TGTACGTCGCGAACGCCGCCGAGCTGACCGCCCTGATGGGCGAGGCGGCGTACGCCGAGCTGGTCCGGCATTGCGAGGCG CACGTGCGGTCCCGGTCGGCGCTCGCGCTGCACCCGGCCGACCCGCACTGA
Upstream 100 bases:
>100_bases GTGTCCGGTGTTGGACCCGATGTCGAGGACGCCCAGCCGCATGGGTCCAACGTACCCAACGGCGGCGGGGACGGCCCCGG ACGGCACGTAGGGTTGACGG
Downstream 100 bases:
>100_bases CGCCGTACCGGGGCCGCTTCTCCCCGCACCGGGCCCGGCCGACCCCGAGGCTCGGGCCGGCTCCGACGGGTCTGTTCTGG ACATCTCGACATCAAGAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MPEVDLVFPRAYVEFVNPADETEVLRCDLTWLTSSYTCIFGRGCPGIYADAPDVGCCTLGAHFADKDDEKRVAEYVGMLD EELWQHKPQRPDGKVRKRDWIELDDEGERKTRTIEVDGQQACIFQNRPDFKNGAGCALHALAYVLDKLPLETKPDVCWQL PIRRTFRDVTRQDGSTYTEVSIGEYDRRGWGPGGHDLDWYCSGNTEAHVGVEPVYVANAAELTALMGEAAYAELVRHCEA HVRSRSALALHPADPH
Sequences:
>Translated_256_residues MPEVDLVFPRAYVEFVNPADETEVLRCDLTWLTSSYTCIFGRGCPGIYADAPDVGCCTLGAHFADKDDEKRVAEYVGMLD EELWQHKPQRPDGKVRKRDWIELDDEGERKTRTIEVDGQQACIFQNRPDFKNGAGCALHALAYVLDKLPLETKPDVCWQL PIRRTFRDVTRQDGSTYTEVSIGEYDRRGWGPGGHDLDWYCSGNTEAHVGVEPVYVANAAELTALMGEAAYAELVRHCEA HVRSRSALALHPADPH >Mature_255_residues PEVDLVFPRAYVEFVNPADETEVLRCDLTWLTSSYTCIFGRGCPGIYADAPDVGCCTLGAHFADKDDEKRVAEYVGMLDE ELWQHKPQRPDGKVRKRDWIELDDEGERKTRTIEVDGQQACIFQNRPDFKNGAGCALHALAYVLDKLPLETKPDVCWQLP IRRTFRDVTRQDGSTYTEVSIGEYDRRGWGPGGHDLDWYCSGNTEAHVGVEPVYVANAAELTALMGEAAYAELVRHCEAH VRSRSALALHPADPH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML2435 and M.tuberculosis Rv0495c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28770; Mature: 28639
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEVDLVFPRAYVEFVNPADETEVLRCDLTWLTSSYTCIFGRGCPGIYADAPDVGCCTLG CCCCEEECCHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEECC AHFADKDDEKRVAEYVGMLDEELWQHKPQRPDGKVRKRDWIELDDEGERKTRTIEVDGQQ CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCE ACIFQNRPDFKNGAGCALHALAYVLDKLPLETKPDVCWQLPIRRTFRDVTRQDGSTYTEV EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEE SIGEYDRRGWGPGGHDLDWYCSGNTEAHVGVEPVYVANAAELTALMGEAAYAELVRHCEA ECCCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH HVRSRSALALHPADPH HHCCCCEEEECCCCCC >Mature Secondary Structure PEVDLVFPRAYVEFVNPADETEVLRCDLTWLTSSYTCIFGRGCPGIYADAPDVGCCTLG CCCEEECCHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEECC AHFADKDDEKRVAEYVGMLDEELWQHKPQRPDGKVRKRDWIELDDEGERKTRTIEVDGQQ CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCE ACIFQNRPDFKNGAGCALHALAYVLDKLPLETKPDVCWQLPIRRTFRDVTRQDGSTYTEV EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEE SIGEYDRRGWGPGGHDLDWYCSGNTEAHVGVEPVYVANAAELTALMGEAAYAELVRHCEA ECCCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH HVRSRSALALHPADPH HHCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]