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The map label for this gene is ytfH [H]

Identifier: 119714684

GI number: 119714684

Start: 451816

End: 452163

Strand: Reverse

Name: ytfH [H]

Synonym: Noca_0420

Alternate gene names: 119714684

Gene position: 452163-451816 (Counterclockwise)

Preceding gene: 119714686

Following gene: 119714681

Centisome position: 9.07

GC content: 72.7

Gene sequence:

>348_bases
GTGCCGTTCGTCCGCGACCTCCAGCTCGACACCGACTGCCCCGACACCCGCCTGCTCGTCGAGCACGTGACCAGCAAGTG
GGGCGTGCTCGTGCTGCTCACGCTCGACGACCGGACGCTGCGCTGGAGCGAGCTCAAGCGCGAGATCGCCGGGGTCAGCG
AGAAGATGTTGATCCAGACCCTCCAGGTGCTCGAGGCCGACGGGCTGGTACGGCGTACCGCGCTGCCGGTGGTGCCGCCG
CACGTGGAGTACTCCCTCACCGACGACGGGCGCGCCGCCGCTGCGCACCTGGCGCCGCTGGTGCGCTGGGCCCAGGCCCG
GGTCGGCCCCCGGGTGGCGGTCAGCTGA

Upstream 100 bases:

>100_bases
CTGGTGTCGTTCCCCTGAACCACCGCGGACTCCGACACCTTCCCAGCAACCAGTACTGACTTTGAAGTGGGGTACCCACC
TTCGGGTAAGGTTCGGTGTC

Downstream 100 bases:

>100_bases
GCACGAGCCGGGTCACCAGCGCGTTGTGGTCGCTCGCGAAGCCGCCGACCACCCACTGGCCCGTGAACCGCATCTGCTCG
GCCCGGTAGGCCGCGCGGTC

Product: helix-turn-helix, HxlR type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MPFVRDLQLDTDCPDTRLLVEHVTSKWGVLVLLTLDDRTLRWSELKREIAGVSEKMLIQTLQVLEADGLVRRTALPVVPP
HVEYSLTDDGRAAAAHLAPLVRWAQARVGPRVAVS

Sequences:

>Translated_115_residues
MPFVRDLQLDTDCPDTRLLVEHVTSKWGVLVLLTLDDRTLRWSELKREIAGVSEKMLIQTLQVLEADGLVRRTALPVVPP
HVEYSLTDDGRAAAAHLAPLVRWAQARVGPRVAVS
>Mature_114_residues
PFVRDLQLDTDCPDTRLLVEHVTSKWGVLVLLTLDDRTLRWSELKREIAGVSEKMLIQTLQVLEADGLVRRTALPVVPPH
VEYSLTDDGRAAAAHLAPLVRWAQARVGPRVAVS

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=94, Percent_Identity=54.2553191489362, Blast_Score=105, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12831; Mature: 12700

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFVRDLQLDTDCPDTRLLVEHVTSKWGVLVLLTLDDRTLRWSELKREIAGVSEKMLIQT
CCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHH
LQVLEADGLVRRTALPVVPPHVEYSLTDDGRAAAAHLAPLVRWAQARVGPRVAVS
HHHHHCCCCCHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEECCC
>Mature Secondary Structure 
PFVRDLQLDTDCPDTRLLVEHVTSKWGVLVLLTLDDRTLRWSELKREIAGVSEKMLIQT
CCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHH
LQVLEADGLVRRTALPVVPPHVEYSLTDDGRAAAAHLAPLVRWAQARVGPRVAVS
HHHHHCCCCCHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]