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The map label for this gene is rbsC [H]

Identifier: 119714671

GI number: 119714671

Start: 437378

End: 438463

Strand: Direct

Name: rbsC [H]

Synonym: Noca_0406

Alternate gene names: 119714671

Gene position: 437378-438463 (Clockwise)

Preceding gene: 119714670

Following gene: 119714672

Centisome position: 8.77

GC content: 66.57

Gene sequence:

>1086_bases
ATGCCGCAGATCGAATCCAGCGTCCTCCCGACAGAGGCTACGGGAAGCAGCAGAGTGATGCGGCCGGAGGACGATGTCTT
GAGTACCGGCACCCGCGTACGTGACGCCGTGGTCAAGTACGGCTTCATCGCCGTGACCGTCGGGCTGTTCGCCTACTTCG
CGCTGTCCGAACCGTCGTTCCGGACGTCGGGCGCCCTCTTCTCGATGCTGAAGTTCGCGTCGGTCACCGCGATCCTCGGA
CTCGGGATGACGTTCGTGATGGCGGTCGGCGGGATGGATCTGTCCATCGGCTCGACCGCCGGCCTGTCGGTGCAGATGGC
CGCCATGACGATGGTGTTCTACAACCTCAACGGGGGCGCAGCGGTCGTCGTGGTGCTGCTCGCCGGGGTCGCGGTCGGCC
TGCTCAACGCGGTGCTGATCGTCCTCTGCAAGATCCCGGACCTCCTCGCAACCCTCGGCGTGATGTTCGTGATCCAGGGG
AGCAAGCTGATCCCGGTCGACGGACAGTCGGTGGCCTCCGGGATGGTGCTCCCCGACGGCACACCGGCGCCGGGCAAGTT
CACGGAGTCGTTCCTGCGGATCGACGGGGGCACACTCGGCCCGGTGCCGTACCCGGTGATCATGATGCTGGTACTGACGA
CCGTCTCGTGGTTCATCCTGGCGCGCACCAAGTGGGGCCGCATCTTCTACGCGATCGGCGCCAACCCCGAGGCCTCACGA
CTGGCCGGTGTCCGGGTCGGGCTGTACCGCGGTCTCGCCTACGTGCTGTGCAGCGTCTTCGCTTCGATCGGCGGGCTGAT
CCTCGTCTCGCGCATCGGCCAGGGCGACGTGAACGCCGGCGCGTCTTCGCTGCTGGAGGCGGTCGCGGTGGCCCTGGTCG
GGACTTCGGTGCTCGGCATGGGCAAGCCCAACGCCTGGGGAACCCTCCTCGGTGCGCTGCTCATCGGCATCGTGCTGACC
GGCCTGACCATGAAGGGCTTCCAGTACTACTACCAGGACACCGCGAAGGGCCTCGTCCTGATCGTCGCCCTGTTGTTCTC
GTTCACGATCTCGCGACGCAAGGTGCGCTACACCCCGGCCACCTAG

Upstream 100 bases:

>100_bases
ACCGGATCATCGTGCTCGTGGAGGGCGACGTCCGCCTGGATTCCTATACCTCGGAAGTTGACAGTGAGGCCATCGTGAAG
AGCATGTCGGAGGTGGCATG

Downstream 100 bases:

>100_bases
CGCCCGAACCAGCGCCGAACCAACGCCGTCCGTCTCAGGAGAATGATGATGTCCGACTACGAGTTCCTCACCGTGGACAC
GGTGGCGTCCTACATCGAGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MPQIESSVLPTEATGSSRVMRPEDDVLSTGTRVRDAVVKYGFIAVTVGLFAYFALSEPSFRTSGALFSMLKFASVTAILG
LGMTFVMAVGGMDLSIGSTAGLSVQMAAMTMVFYNLNGGAAVVVVLLAGVAVGLLNAVLIVLCKIPDLLATLGVMFVIQG
SKLIPVDGQSVASGMVLPDGTPAPGKFTESFLRIDGGTLGPVPYPVIMMLVLTTVSWFILARTKWGRIFYAIGANPEASR
LAGVRVGLYRGLAYVLCSVFASIGGLILVSRIGQGDVNAGASSLLEAVAVALVGTSVLGMGKPNAWGTLLGALLIGIVLT
GLTMKGFQYYYQDTAKGLVLIVALLFSFTISRRKVRYTPAT

Sequences:

>Translated_361_residues
MPQIESSVLPTEATGSSRVMRPEDDVLSTGTRVRDAVVKYGFIAVTVGLFAYFALSEPSFRTSGALFSMLKFASVTAILG
LGMTFVMAVGGMDLSIGSTAGLSVQMAAMTMVFYNLNGGAAVVVVLLAGVAVGLLNAVLIVLCKIPDLLATLGVMFVIQG
SKLIPVDGQSVASGMVLPDGTPAPGKFTESFLRIDGGTLGPVPYPVIMMLVLTTVSWFILARTKWGRIFYAIGANPEASR
LAGVRVGLYRGLAYVLCSVFASIGGLILVSRIGQGDVNAGASSLLEAVAVALVGTSVLGMGKPNAWGTLLGALLIGIVLT
GLTMKGFQYYYQDTAKGLVLIVALLFSFTISRRKVRYTPAT
>Mature_360_residues
PQIESSVLPTEATGSSRVMRPEDDVLSTGTRVRDAVVKYGFIAVTVGLFAYFALSEPSFRTSGALFSMLKFASVTAILGL
GMTFVMAVGGMDLSIGSTAGLSVQMAAMTMVFYNLNGGAAVVVVLLAGVAVGLLNAVLIVLCKIPDLLATLGVMFVIQGS
KLIPVDGQSVASGMVLPDGTPAPGKFTESFLRIDGGTLGPVPYPVIMMLVLTTVSWFILARTKWGRIFYAIGANPEASRL
AGVRVGLYRGLAYVLCSVFASIGGLILVSRIGQGDVNAGASSLLEAVAVALVGTSVLGMGKPNAWGTLLGALLIGIVLTG
LTMKGFQYYYQDTAKGLVLIVALLFSFTISRRKVRYTPAT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=300, Percent_Identity=34, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1788896, Length=338, Percent_Identity=28.9940828402367, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790524, Length=317, Percent_Identity=27.7602523659306, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788471, Length=328, Percent_Identity=28.9634146341463, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87082395, Length=324, Percent_Identity=26.8518518518519, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1789992, Length=365, Percent_Identity=25.2054794520548, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787794, Length=294, Percent_Identity=30.2721088435374, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787793, Length=279, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693152, Length=327, Percent_Identity=29.0519877675841, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693214, Length=273, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37671; Mature: 37540

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQIESSVLPTEATGSSRVMRPEDDVLSTGTRVRDAVVKYGFIAVTVGLFAYFALSEPSF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RTSGALFSMLKFASVTAILGLGMTFVMAVGGMDLSIGSTAGLSVQMAAMTMVFYNLNGGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHEEHEEECCCCH
AVVVVLLAGVAVGLLNAVLIVLCKIPDLLATLGVMFVIQGSKLIPVDGQSVASGMVLPDG
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCC
TPAPGKFTESFLRIDGGTLGPVPYPVIMMLVLTTVSWFILARTKWGRIFYAIGANPEASR
CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH
LAGVRVGLYRGLAYVLCSVFASIGGLILVSRIGQGDVNAGASSLLEAVAVALVGTSVLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GKPNAWGTLLGALLIGIVLTGLTMKGFQYYYQDTAKGLVLIVALLFSFTISRRKVRYTPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
T
C
>Mature Secondary Structure 
PQIESSVLPTEATGSSRVMRPEDDVLSTGTRVRDAVVKYGFIAVTVGLFAYFALSEPSF
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RTSGALFSMLKFASVTAILGLGMTFVMAVGGMDLSIGSTAGLSVQMAAMTMVFYNLNGGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHEEHEEECCCCH
AVVVVLLAGVAVGLLNAVLIVLCKIPDLLATLGVMFVIQGSKLIPVDGQSVASGMVLPDG
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCC
TPAPGKFTESFLRIDGGTLGPVPYPVIMMLVLTTVSWFILARTKWGRIFYAIGANPEASR
CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH
LAGVRVGLYRGLAYVLCSVFASIGGLILVSRIGQGDVNAGASSLLEAVAVALVGTSVLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GKPNAWGTLLGALLIGIVLTGLTMKGFQYYYQDTAKGLVLIVALLFSFTISRRKVRYTPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]