Click here to switch to the map view.

The map label for this gene is ygbL [C]

Identifier: 119714663

GI number: 119714663

Start: 428636

End: 429280

Strand: Reverse

Name: ygbL [C]

Synonym: Noca_0398

Alternate gene names: 119714663

Gene position: 429280-428636 (Counterclockwise)

Preceding gene: 119714664

Following gene: 119714657

Centisome position: 8.61

GC content: 70.23

Gene sequence:

>645_bases
GTGCACGTGTCCGAGGCCGACGCCCGCGCGGCCGTCTGCGAGGTGGGACGGCGGCTCTGGCAGCGCGGGATGGTTGCCGC
CAACGACGGCAACATCTCCGTGCGCGTCGACCCCGACAGCTTCCTGTGCACACCGACAGGAGTGAGCAAGGGCACGCTGC
GGCCCGAGGACCTGCCCGTCGTCGACGGCACCGGGCAGCTCCTCGGGGGCGGCGACGTCCGGCCGTCCTCGGAGATCCGG
ATGCACCTGCGGGTCTACGCCGTGGACCCGCAGGTGCACGCGGTCGTCCATGCCCACCCGATGTACTCGACCGTGTGGGC
GATCAAGGGCGAAGGGCTCTACGGACCGATGATGCCCGAGACCGTCGTGGCGATGCCCGAGGTCCCCCTGGCGTCCTACG
CCACGCCGTCCACGGACGCCGTGCCGGACTCCATCGAGCCGTTCGTCCTGTCGCACCGTGCCTGCCTGCTGGAGCACCAC
GGCGCCCTCACCTGGGGCACGGACCTGGAGCAGGCGTACCTCGCCATGGAACGGCTCGAGTACACCGCGCAGGTGACGTT
CCTACTGCGCCAGATAGGCGGAGCCCGCTATCTCCCGGCCGCCGAGGTCGCCCGACTGAACACGATCTTCAACACTGGAC
GCTGA

Upstream 100 bases:

>100_bases
GCTCCAGGCCGTGCGCTCCGTCGTCCACGACGAGTGGTCGCCCGAGAAGGCGGCCGAGCTCTACCGTGACCTCTCCCACG
GCGCGGAGGACTGATCCGAG

Downstream 100 bases:

>100_bases
GGTTCCGCGCACGTAGTCCGCGCCGCCCGTCCGCCGACGGCAGGCGACCGGCGAGGTCAGGCCCCGGCCGTGGCCTTCGG
CTGGTCCGCGGGAGCCGCCG

Product: class II aldolase/adducin family protein

Products: glycerone phosphate; (S)-lactaldehyde

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MHVSEADARAAVCEVGRRLWQRGMVAANDGNISVRVDPDSFLCTPTGVSKGTLRPEDLPVVDGTGQLLGGGDVRPSSEIR
MHLRVYAVDPQVHAVVHAHPMYSTVWAIKGEGLYGPMMPETVVAMPEVPLASYATPSTDAVPDSIEPFVLSHRACLLEHH
GALTWGTDLEQAYLAMERLEYTAQVTFLLRQIGGARYLPAAEVARLNTIFNTGR

Sequences:

>Translated_214_residues
MHVSEADARAAVCEVGRRLWQRGMVAANDGNISVRVDPDSFLCTPTGVSKGTLRPEDLPVVDGTGQLLGGGDVRPSSEIR
MHLRVYAVDPQVHAVVHAHPMYSTVWAIKGEGLYGPMMPETVVAMPEVPLASYATPSTDAVPDSIEPFVLSHRACLLEHH
GALTWGTDLEQAYLAMERLEYTAQVTFLLRQIGGARYLPAAEVARLNTIFNTGR
>Mature_214_residues
MHVSEADARAAVCEVGRRLWQRGMVAANDGNISVRVDPDSFLCTPTGVSKGTLRPEDLPVVDGTGQLLGGGDVRPSSEIR
MHLRVYAVDPQVHAVVHAHPMYSTVWAIKGEGLYGPMMPETVVAMPEVPLASYATPSTDAVPDSIEPFVLSHRACLLEHH
GALTWGTDLEQAYLAMERLEYTAQVTFLLRQIGGARYLPAAEVARLNTIFNTGR

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789094, Length=210, Percent_Identity=32.8571428571429, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789164, Length=165, Percent_Identity=31.5151515151515, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: 4.1.2.17

Molecular weight: Translated: 23247; Mature: 23247

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVSEADARAAVCEVGRRLWQRGMVAANDGNISVRVDPDSFLCTPTGVSKGTLRPEDLPV
CCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCEE
VDGTGQLLGGGDVRPSSEIRMHLRVYAVDPQVHAVVHAHPMYSTVWAIKGEGLYGPMMPE
ECCCCCEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCC
TVVAMPEVPLASYATPSTDAVPDSIEPFVLSHRACLLEHHGALTWGTDLEQAYLAMERLE
CEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
YTAQVTFLLRQIGGARYLPAAEVARLNTIFNTGR
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHVSEADARAAVCEVGRRLWQRGMVAANDGNISVRVDPDSFLCTPTGVSKGTLRPEDLPV
CCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCEE
VDGTGQLLGGGDVRPSSEIRMHLRVYAVDPQVHAVVHAHPMYSTVWAIKGEGLYGPMMPE
ECCCCCEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCC
TVVAMPEVPLASYATPSTDAVPDSIEPFVLSHRACLLEHHGALTWGTDLEQAYLAMERLE
CEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
YTAQVTFLLRQIGGARYLPAAEVARLNTIFNTGR
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-fuculose 1-phosphate

Specific reaction: L-fuculose 1-phosphate = glycerone phosphate + (S)-lactaldehyde

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]