| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714571
Identifier: 119714571
GI number: 119714571
Start: 324276
End: 325691
Strand: Direct
Name: 119714571
Synonym: Noca_0304
Alternate gene names: NA
Gene position: 324276-325691 (Clockwise)
Preceding gene: 119714569
Following gene: 119714572
Centisome position: 6.5
GC content: 80.08
Gene sequence:
>1416_bases GTGGCCGGCACGCACGCACCCGCGGACATCCTCGCGCTCTCGGTCCACGGCCCGGTCGGCGTCCTCGACCTGGTCGTGCC GGGCACCGCGACGGCCGCGGACGTCGCCGAGGAGTACGCCGTCCGCGCCGGCCTCGACGCCGCCCCGGTGCTGCGAAGCC GACTGGGCCACGGCCTCGAGCCGGCGACCACGCTCGCCCGCGCCGGGGTCGTCACCGGCGACCTGCTCGTCGCCGACCCG AGCGCGCCAGGCGTCCCCGCCGACCGAGCGGCCGAGCCGGTGGCGGGCGGCCGGCATGCGGCCCGGAGCGGACCGGCCGC CGACGGTTCCCCGCGGCCGCGCCCAGACACCCTGCCGATGCTGGGGCTCGCGGTGGCCGCGGCCGCGGCTGGGCTGGCCG GCTGGTGCGCCGCCACCGCGCCGGGCGGCGCCCTTCGGGCGACGGCCATCGGACTCCTGCTGGTGGCGGCGGTGCTCGGG GTGCTCCCGATCGGCCGGCGCGCCGCCCACCGGGTCGTCGCGGCCCCGGCCTTCGGTGCGGCCGCCGCGTTCGCGATGGC GTGGGACCCGCACGGCGTGCGGCTCCCCATGGTGCTCGGCGTCACCGGCCTCGCGGCCGCCCTGGTCGCGGCGGTCGGGC GGGCGCTCGCGGCCCGACCGGGTGAGGCGCTCCGGGTATGGGTGCTCGCGGGCGTCGCCGGGTTCGTCGGCACCGGCCTC GCCTCGCTCGGCGGAGCGCCGCCCCGGCTGGTGTGGTCGCTGGTCCTGCTCGGGGCGCTGCTCGCCGCGCGGTTCGTCCC GGCCGTCGCGGTCGACGTGCCCGACCAGTACCTCATCGATCTCGACCGCCTCGCGGTCACCGCGTGGTCCGCCCGCGAGC AGCCGAGCGGCCGTCGCGGGCGCACCGTCGTACCCCTCGACGCGGTCGACGCCGTCGCGGCCCGCGGGACCCGGATCGTC ACGGCCGCCAGCGCCGCGGTGCTCGCGGCGGTCCTGCTGTCCGCCCCGCTGCTGCTGGCCGCCGCGACGCTGCCGATCGA CCGGGTCGGGGCGCGGGTGCTGGTCGGTTGCGCGGGGGCCGGACTCCTCCTCGCCGCCCGCAGCTACCGTCACGCGGCCG CCCGGGCGCTGCTGCGGATCGCCGGCCTGGCCTGTGGAACGGTGCTGGCGACGGCCCTGCTGGGCGCTGCCGGTCGGGCC GGCTGGTGGCTCGCCGGCCTCGCGGTCCTCACCGCCGCGGCGCTCGTCGTCGCGGCCGTGGCGGTCGGCCGGGGTTGGCG CTCCGCGTGGTGGTCGCGCCGGGCCGAGGTGGCCGAGGGGCTGGCCGGCGCGACGGCGGTCGGCGCCCTGGTCGTGGCGT CCGGATGGTTCCGCCAGCTCTGGGAGCTGGCGAGCCTGTGGAAACTCGGAGCCTGA
Upstream 100 bases:
>100_bases GCCCCCTGTCTTCGGGCCGCTCGGTCGGCGAACGGCGTCGGGAGGGGCATACCCGCGCCGGGCGGGGTTGACGCCTCGCA ATCGGGGGGAAGGTGACGTC
Downstream 100 bases:
>100_bases GGTTTAGGCCACATCGGGCGGGGGCAATCGACCCGTGTCCGGCTCGGGCCGACACCGGGCGGGATCGCCACCACACAGCG ATTCTCGAGCGGCTTCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MAGTHAPADILALSVHGPVGVLDLVVPGTATAADVAEEYAVRAGLDAAPVLRSRLGHGLEPATTLARAGVVTGDLLVADP SAPGVPADRAAEPVAGGRHAARSGPAADGSPRPRPDTLPMLGLAVAAAAAGLAGWCAATAPGGALRATAIGLLLVAAVLG VLPIGRRAAHRVVAAPAFGAAAAFAMAWDPHGVRLPMVLGVTGLAAALVAAVGRALAARPGEALRVWVLAGVAGFVGTGL ASLGGAPPRLVWSLVLLGALLAARFVPAVAVDVPDQYLIDLDRLAVTAWSAREQPSGRRGRTVVPLDAVDAVAARGTRIV TAASAAVLAAVLLSAPLLLAAATLPIDRVGARVLVGCAGAGLLLAARSYRHAAARALLRIAGLACGTVLATALLGAAGRA GWWLAGLAVLTAAALVVAAVAVGRGWRSAWWSRRAEVAEGLAGATAVGALVVASGWFRQLWELASLWKLGA
Sequences:
>Translated_471_residues MAGTHAPADILALSVHGPVGVLDLVVPGTATAADVAEEYAVRAGLDAAPVLRSRLGHGLEPATTLARAGVVTGDLLVADP SAPGVPADRAAEPVAGGRHAARSGPAADGSPRPRPDTLPMLGLAVAAAAAGLAGWCAATAPGGALRATAIGLLLVAAVLG VLPIGRRAAHRVVAAPAFGAAAAFAMAWDPHGVRLPMVLGVTGLAAALVAAVGRALAARPGEALRVWVLAGVAGFVGTGL ASLGGAPPRLVWSLVLLGALLAARFVPAVAVDVPDQYLIDLDRLAVTAWSAREQPSGRRGRTVVPLDAVDAVAARGTRIV TAASAAVLAAVLLSAPLLLAAATLPIDRVGARVLVGCAGAGLLLAARSYRHAAARALLRIAGLACGTVLATALLGAAGRA GWWLAGLAVLTAAALVVAAVAVGRGWRSAWWSRRAEVAEGLAGATAVGALVVASGWFRQLWELASLWKLGA >Mature_470_residues AGTHAPADILALSVHGPVGVLDLVVPGTATAADVAEEYAVRAGLDAAPVLRSRLGHGLEPATTLARAGVVTGDLLVADPS APGVPADRAAEPVAGGRHAARSGPAADGSPRPRPDTLPMLGLAVAAAAAGLAGWCAATAPGGALRATAIGLLLVAAVLGV LPIGRRAAHRVVAAPAFGAAAAFAMAWDPHGVRLPMVLGVTGLAAALVAAVGRALAARPGEALRVWVLAGVAGFVGTGLA SLGGAPPRLVWSLVLLGALLAARFVPAVAVDVPDQYLIDLDRLAVTAWSAREQPSGRRGRTVVPLDAVDAVAARGTRIVT AASAAVLAAVLLSAPLLLAAATLPIDRVGARVLVGCAGAGLLLAARSYRHAAARALLRIAGLACGTVLATALLGAAGRAG WWLAGLAVLTAAALVVAAVAVGRGWRSAWWSRRAEVAEGLAGATAVGALVVASGWFRQLWELASLWKLGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46653; Mature: 46522
Theoretical pI: Translated: 11.70; Mature: 11.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGTHAPADILALSVHGPVGVLDLVVPGTATAADVAEEYAVRAGLDAAPVLRSRLGHGLE CCCCCCCHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC PATTLARAGVVTGDLLVADPSAPGVPADRAAEPVAGGRHAARSGPAADGSPRPRPDTLPM HHHHHHHHCCEECCEEEECCCCCCCCCHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHH LGLAVAAAAAGLAGWCAATAPGGALRATAIGLLLVAAVLGVLPIGRRAAHRVVAAPAFGA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH AAAFAMAWDPHGVRLPMVLGVTGLAAALVAAVGRALAARPGEALRVWVLAGVAGFVGTGL HHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH ASLGGAPPRLVWSLVLLGALLAARFVPAVAVDVPDQYLIDLDRLAVTAWSAREQPSGRRG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC RTVVPLDAVDAVAARGTRIVTAASAAVLAAVLLSAPLLLAAATLPIDRVGARVLVGCAGA CEEECHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHCCH GLLLAARSYRHAAARALLRIAGLACGTVLATALLGAAGRAGWWLAGLAVLTAAALVVAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AVGRGWRSAWWSRRAEVAEGLAGATAVGALVVASGWFRQLWELASLWKLGA HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AGTHAPADILALSVHGPVGVLDLVVPGTATAADVAEEYAVRAGLDAAPVLRSRLGHGLE CCCCCCHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC PATTLARAGVVTGDLLVADPSAPGVPADRAAEPVAGGRHAARSGPAADGSPRPRPDTLPM HHHHHHHHCCEECCEEEECCCCCCCCCHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHH LGLAVAAAAAGLAGWCAATAPGGALRATAIGLLLVAAVLGVLPIGRRAAHRVVAAPAFGA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH AAAFAMAWDPHGVRLPMVLGVTGLAAALVAAVGRALAARPGEALRVWVLAGVAGFVGTGL HHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH ASLGGAPPRLVWSLVLLGALLAARFVPAVAVDVPDQYLIDLDRLAVTAWSAREQPSGRRG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC RTVVPLDAVDAVAARGTRIVTAASAAVLAAVLLSAPLLLAAATLPIDRVGARVLVGCAGA CEEECHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHCCH GLLLAARSYRHAAARALLRIAGLACGTVLATALLGAAGRAGWWLAGLAVLTAAALVVAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AVGRGWRSAWWSRRAEVAEGLAGATAVGALVVASGWFRQLWELASLWKLGA HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA