Click here to switch to the map view.

The map label for this gene is ykrA [H]

Identifier: 119714442

GI number: 119714442

Start: 188777

End: 189625

Strand: Direct

Name: ykrA [H]

Synonym: Noca_0175

Alternate gene names: 119714442

Gene position: 188777-189625 (Clockwise)

Preceding gene: 119714441

Following gene: 119714443

Centisome position: 3.79

GC content: 72.08

Gene sequence:

>849_bases
GTGAGCGGACCCGTGAGCGGCTGGCGGCCCCGGCTCGTCGCCCTCGACATCGACGGCACGATCCTGAAGTGGGTGGAGGG
GTCGGGCACCACCCGCGAGGAGATCTCACCCACGGTCAAGGAGTCGGTGCACCGCGTCCTGGCCGCCGGTGCCCACGTGG
TGCTGGCCAGCGGCCGGTCCCCGCACGGCATGACCAACGTGGCGGACCTGCTCGAGCTGCACGGTCCGGGCCGCGACCGG
CTCTGGATCGTGGCGTCCAACGGTGCCGTGGTGTTCCGCTACCCGCCGCTCGACGTGGTCCACGAGGAGACCTTCGACGC
GCGGCCGGCCGTGGAGGCGATCCTCGACCGGCACCCGACCGCGCTCGTGGCGGTCGAGGAGCGCGGCGTCGGCTACCGGG
TCAACTCGCACTTCCCGGACGGCGAGCTGTCCGGCGACATGATCGTCACCGAGATCGACGAGCTGCTCGCGGTCGAGGTC
AGCCGGGTGATCATCCGCGACCCGGAGTCCACCGCCGACGAGTTCGTCGCGCTCGCCGAGGAGCTGGGGCTGCAGGGCAC
CAACTACGTCGTCGGCTGGACCGCCTGGCTCGACCTCGCCCCCGTCGGCGTCTCGAAGGCCTCCGGGCTCGAGTACGTCG
CCAAGCAGCTCGGCATCTCCTCCGACGACACCCTTGCGCTCGGCGACGGCCGCAACGACGTCGAGATGTTCGAGTGGGCG
CACCGCGGGGTCGCGATGGGCCAGGCGATCGAGGAGGTCCTGGCGAAGGCCGACGCCGTCACCGGCAGCGTCTACGAGGA
CGGCGTGGCGACCGAGCTGGACCGGTGGTTCGGGGACGGGCGCGCCTGA

Upstream 100 bases:

>100_bases
TGGCGGTGCTCGAGACCCACCAGCAGGCCGACGGCTCGGTCCGGGTGCCGAAGGCGCTCCAGCCCTGGCTGGGCCGCGAG
GTCCTGGAGCCGGTCACCAC

Downstream 100 bases:

>100_bases
TGCTGCCCGACGGTCCTCCTGAGGTGGTCACCAGCGAGCGGCTCCGGCTGCCGCTGTGGACGCCGCAGGACGCCGCCGAC
ATCCGGGCCGGCCGGCACCG

Product: HAD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSGPVSGWRPRLVALDIDGTILKWVEGSGTTREEISPTVKESVHRVLAAGAHVVLASGRSPHGMTNVADLLELHGPGRDR
LWIVASNGAVVFRYPPLDVVHEETFDARPAVEAILDRHPTALVAVEERGVGYRVNSHFPDGELSGDMIVTEIDELLAVEV
SRVIIRDPESTADEFVALAEELGLQGTNYVVGWTAWLDLAPVGVSKASGLEYVAKQLGISSDDTLALGDGRNDVEMFEWA
HRGVAMGQAIEEVLAKADAVTGSVYEDGVATELDRWFGDGRA

Sequences:

>Translated_282_residues
MSGPVSGWRPRLVALDIDGTILKWVEGSGTTREEISPTVKESVHRVLAAGAHVVLASGRSPHGMTNVADLLELHGPGRDR
LWIVASNGAVVFRYPPLDVVHEETFDARPAVEAILDRHPTALVAVEERGVGYRVNSHFPDGELSGDMIVTEIDELLAVEV
SRVIIRDPESTADEFVALAEELGLQGTNYVVGWTAWLDLAPVGVSKASGLEYVAKQLGISSDDTLALGDGRNDVEMFEWA
HRGVAMGQAIEEVLAKADAVTGSVYEDGVATELDRWFGDGRA
>Mature_281_residues
SGPVSGWRPRLVALDIDGTILKWVEGSGTTREEISPTVKESVHRVLAAGAHVVLASGRSPHGMTNVADLLELHGPGRDRL
WIVASNGAVVFRYPPLDVVHEETFDARPAVEAILDRHPTALVAVEERGVGYRVNSHFPDGELSGDMIVTEIDELLAVEVS
RVIIRDPESTADEFVALAEELGLQGTNYVVGWTAWLDLAPVGVSKASGLEYVAKQLGISSDDTLALGDGRNDVEMFEWAH
RGVAMGQAIEEVLAKADAVTGSVYEDGVATELDRWFGDGRA

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=279, Percent_Identity=27.2401433691756, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 30330; Mature: 30199

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPVSGWRPRLVALDIDGTILKWVEGSGTTREEISPTVKESVHRVLAAGAHVVLASGRS
CCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCEEEEECCCC
PHGMTNVADLLELHGPGRDRLWIVASNGAVVFRYPPLDVVHEETFDARPAVEAILDRHPT
CCCCHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCHHHHCCCCCCCHHHHHHHHCCCE
ALVAVEERGVGYRVNSHFPDGELSGDMIVTEIDELLAVEVSRVIIRDPESTADEFVALAE
EEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
ELGLQGTNYVVGWTAWLDLAPVGVSKASGLEYVAKQLGISSDDTLALGDGRNDVEMFEWA
HHCCCCCCEEEEEEHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
HRGVAMGQAIEEVLAKADAVTGSVYEDGVATELDRWFGDGRA
HHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGPVSGWRPRLVALDIDGTILKWVEGSGTTREEISPTVKESVHRVLAAGAHVVLASGRS
CCCCCCCCCEEEEEECCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCEEEEECCCC
PHGMTNVADLLELHGPGRDRLWIVASNGAVVFRYPPLDVVHEETFDARPAVEAILDRHPT
CCCCHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCHHHHCCCCCCCHHHHHHHHCCCE
ALVAVEERGVGYRVNSHFPDGELSGDMIVTEIDELLAVEVSRVIIRDPESTADEFVALAE
EEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
ELGLQGTNYVVGWTAWLDLAPVGVSKASGLEYVAKQLGISSDDTLALGDGRNDVEMFEWA
HHCCCCCCEEEEEEHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
HRGVAMGQAIEEVLAKADAVTGSVYEDGVATELDRWFGDGRA
HHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]