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The map label for this gene is ycdB [C]

Identifier: 119714321

GI number: 119714321

Start: 56595

End: 58040

Strand: Direct

Name: ycdB [C]

Synonym: Noca_0050

Alternate gene names: 119714321

Gene position: 56595-58040 (Clockwise)

Preceding gene: 119714317

Following gene: 119714322

Centisome position: 1.14

GC content: 69.02

Gene sequence:

>1446_bases
ATGACCGAGCAGCACCACAACCCCACCGAACTCACCGCCAGCACCCCTGGTGCGGCCAGACATGCCCGCGGGGTCGTCCC
CTTCCAGCCGGACGACCCCGTCATGAAGTCGCCCTACGCCCACGGCGCATTCGTCTTCGCGACCCTTCCCGCCGAGTGGG
ACACCCCCGCCGTGACCACCTGGCTCACCACCATCGACACCGCCCGACAGGCCCTGCGTGCTGCGTGCACTCCTGACGTG
GTTCGCGTCGCGACGATCGCCGTGGGGTTCGGGCCTTCGTTCTTCTATCGGCCCGACGCCACTGTGCGCTTCGCCGGGGT
GACTCCGCCGGCGGGATTCGCTCAGCTGCCTCCGATGCCGCACGGCGCGGCGGTGCCGGCCGACGTGTGCTTCTACATCG
TGGCGATCGCCGAGGCAGAGATCGCCAAGTTCGTCAACGCGCTCGCGGCCAGCGGCGTCACCGGCCTGGCGATGGAGCAC
GGCTACAAGTCCTATCCGGACGAGGAGGCGTTCGGGTACCGAGACGGGGTCCGCAACATCCCCGTGTCCTCGCGCAACGA
TTTCGTGTTCATTGACGCCGACCGCAACGCCGAGGAGCCGGACTGGACCCACCACGGCACCTACATGGCCTACATGCGCA
TCGCCCAGAACCTGGCCGCGTTCCAGGCGATCCCGGCCGCCGAGCAGGACCAGGTCATCGGCCGGGACCGGACGGGCCGC
CGCCTCGACCTCCCCGAGGGCACCAAAGCAAAGGACGAGCCGTCCTTCGCTACCGACGACCCGCGCCTGGACTCCCACGT
CCGCAAGGTCGGTCCGCGCGGGTTCGAGCACCGCGACGAGACCCAGATCTTCCGTCGCGGCCTGCCGTTCTTCGAGGTGC
GCGACGGCCAGGTCGTCCAGGGGCTGCAGTTCGCCTCCTTCCAGGCCTCGCTCGACCAGTTCGACGCGGTGTTCAACCGG
TGGATGCTCAACCCCGACTTCCCGCGGTCCGGGACAGGGGTCGACGCACTCGTGGCGCGCGGCCTGATCACGATCGAGAA
GTGGGGTTTCTACTTCGTGCCTCCCGACACCGACGGCCCCATCGGGATGGGCATGTTCGCGCCCGCCAAGGAGACGCGGA
AGCCGAAGACGGGCAGAGTGGCGGTCCGCAAAGAGCTGGTCGACGCGAACGGGACACGCGTCAACGGCGACCTGGGCGGC
TTCACCTTCCAGATCACCGACCTGGAGGGCAACCCGGTCGGAGAGTCGTTCACTTCAAACTCGCATGGCCACGCGCTGTC
GGGCGAGATCCCGCTCGGCGACTACCAGCTGACCGAGCTGCCCCCTCAGCCCCCGCAGCCGCCGATGCCAGCGGCCGGGC
CGGTGTCGTTCACTCTCCGCTCCGCCCAGGAGGTCGTGAAGGTCCGCAACCAGCTCACCCCCGCCGCCGGACCGTACAAC
GGCTGA

Upstream 100 bases:

>100_bases
AATGTTCTGACGGCGCACCTCGGGCGACCCCGCCCACGGCTCTCGTGCAGTGCTCCAGGGTTGCTGCACTCATTCCACGA
CCGCCTCTAGGAGGCATCCC

Downstream 100 bases:

>100_bases
GCCGACACCTGACACAGCGGGATATGTCTCCGCCGAGACCGAAATCTGTCAGGGACTCTTCCCATGGTGGGAGCCCAGGA
GCGAGGTGTGAAGTGAACAG

Product: Dyp-type peroxidase family protein

Products: NA

Alternate protein names: Tat-Translocated

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MTEQHHNPTELTASTPGAARHARGVVPFQPDDPVMKSPYAHGAFVFATLPAEWDTPAVTTWLTTIDTARQALRAACTPDV
VRVATIAVGFGPSFFYRPDATVRFAGVTPPAGFAQLPPMPHGAAVPADVCFYIVAIAEAEIAKFVNALAASGVTGLAMEH
GYKSYPDEEAFGYRDGVRNIPVSSRNDFVFIDADRNAEEPDWTHHGTYMAYMRIAQNLAAFQAIPAAEQDQVIGRDRTGR
RLDLPEGTKAKDEPSFATDDPRLDSHVRKVGPRGFEHRDETQIFRRGLPFFEVRDGQVVQGLQFASFQASLDQFDAVFNR
WMLNPDFPRSGTGVDALVARGLITIEKWGFYFVPPDTDGPIGMGMFAPAKETRKPKTGRVAVRKELVDANGTRVNGDLGG
FTFQITDLEGNPVGESFTSNSHGHALSGEIPLGDYQLTELPPQPPQPPMPAAGPVSFTLRSAQEVVKVRNQLTPAAGPYN
G

Sequences:

>Translated_481_residues
MTEQHHNPTELTASTPGAARHARGVVPFQPDDPVMKSPYAHGAFVFATLPAEWDTPAVTTWLTTIDTARQALRAACTPDV
VRVATIAVGFGPSFFYRPDATVRFAGVTPPAGFAQLPPMPHGAAVPADVCFYIVAIAEAEIAKFVNALAASGVTGLAMEH
GYKSYPDEEAFGYRDGVRNIPVSSRNDFVFIDADRNAEEPDWTHHGTYMAYMRIAQNLAAFQAIPAAEQDQVIGRDRTGR
RLDLPEGTKAKDEPSFATDDPRLDSHVRKVGPRGFEHRDETQIFRRGLPFFEVRDGQVVQGLQFASFQASLDQFDAVFNR
WMLNPDFPRSGTGVDALVARGLITIEKWGFYFVPPDTDGPIGMGMFAPAKETRKPKTGRVAVRKELVDANGTRVNGDLGG
FTFQITDLEGNPVGESFTSNSHGHALSGEIPLGDYQLTELPPQPPQPPMPAAGPVSFTLRSAQEVVKVRNQLTPAAGPYN
G
>Mature_480_residues
TEQHHNPTELTASTPGAARHARGVVPFQPDDPVMKSPYAHGAFVFATLPAEWDTPAVTTWLTTIDTARQALRAACTPDVV
RVATIAVGFGPSFFYRPDATVRFAGVTPPAGFAQLPPMPHGAAVPADVCFYIVAIAEAEIAKFVNALAASGVTGLAMEHG
YKSYPDEEAFGYRDGVRNIPVSSRNDFVFIDADRNAEEPDWTHHGTYMAYMRIAQNLAAFQAIPAAEQDQVIGRDRTGRR
LDLPEGTKAKDEPSFATDDPRLDSHVRKVGPRGFEHRDETQIFRRGLPFFEVRDGQVVQGLQFASFQASLDQFDAVFNRW
MLNPDFPRSGTGVDALVARGLITIEKWGFYFVPPDTDGPIGMGMFAPAKETRKPKTGRVAVRKELVDANGTRVNGDLGGF
TFQITDLEGNPVGESFTSNSHGHALSGEIPLGDYQLTELPPQPPQPPMPAAGPVSFTLRSAQEVVKVRNQLTPAAGPYNG

Specific function: Unknown

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52291; Mature: 52160

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQHHNPTELTASTPGAARHARGVVPFQPDDPVMKSPYAHGAFVFATLPAEWDTPAVTT
CCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCHHHH
WLTTIDTARQALRAACTPDVVRVATIAVGFGPSFFYRPDATVRFAGVTPPAGFAQLPPMP
HHHHHHHHHHHHHHHCCCHHEEEEHEEEECCCCEEECCCCCEEEECCCCCCCCCCCCCCC
HGAAVPADVCFYIVAIAEAEIAKFVNALAASGVTGLAMEHGYKSYPDEEAFGYRDGVRNI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHCCHHCCCCCC
PVSSRNDFVFIDADRNAEEPDWTHHGTYMAYMRIAQNLAAFQAIPAAEQDQVIGRDRTGR
CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC
RLDLPEGTKAKDEPSFATDDPRLDSHVRKVGPRGFEHRDETQIFRRGLPFFEVRDGQVVQ
EECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEECCCCHHC
GLQFASFQASLDQFDAVFNRWMLNPDFPRSGTGVDALVARGLITIEKWGFYFVPPDTDGP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEEECCEEEECCCCCCC
IGMGMFAPAKETRKPKTGRVAVRKELVDANGTRVNGDLGGFTFQITDLEGNPVGESFTSN
CCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCC
SHGHALSGEIPLGDYQLTELPPQPPQPPMPAAGPVSFTLRSAQEVVKVRNQLTPAAGPYN
CCCCEECCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
G
C
>Mature Secondary Structure 
TEQHHNPTELTASTPGAARHARGVVPFQPDDPVMKSPYAHGAFVFATLPAEWDTPAVTT
CCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCHHHH
WLTTIDTARQALRAACTPDVVRVATIAVGFGPSFFYRPDATVRFAGVTPPAGFAQLPPMP
HHHHHHHHHHHHHHHCCCHHEEEEHEEEECCCCEEECCCCCEEEECCCCCCCCCCCCCCC
HGAAVPADVCFYIVAIAEAEIAKFVNALAASGVTGLAMEHGYKSYPDEEAFGYRDGVRNI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHCCHHCCCCCC
PVSSRNDFVFIDADRNAEEPDWTHHGTYMAYMRIAQNLAAFQAIPAAEQDQVIGRDRTGR
CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC
RLDLPEGTKAKDEPSFATDDPRLDSHVRKVGPRGFEHRDETQIFRRGLPFFEVRDGQVVQ
EECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEECCCCHHC
GLQFASFQASLDQFDAVFNRWMLNPDFPRSGTGVDALVARGLITIEKWGFYFVPPDTDGP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEEECCEEEECCCCCCC
IGMGMFAPAKETRKPKTGRVAVRKELVDANGTRVNGDLGGFTFQITDLEGNPVGESFTSN
CCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCC
SHGHALSGEIPLGDYQLTELPPQPPQPPMPAAGPVSFTLRSAQEVVKVRNQLTPAAGPYN
CCCCEECCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA