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The map label for this gene is yfdE [H]

Identifier: 119714319

GI number: 119714319

Start: 52863

End: 54101

Strand: Reverse

Name: yfdE [H]

Synonym: Noca_0047

Alternate gene names: 119714319

Gene position: 54101-52863 (Counterclockwise)

Preceding gene: 119714320

Following gene: 119714318

Centisome position: 1.09

GC content: 72.24

Gene sequence:

>1239_bases
ATGGTGAAGGCCGAAGCCGCTGTGCTGCCGTTGTCGGGGGTGCGGGTGGTGGACCTGACCCGGGCGTTGTCGGGTCCGTT
CTGCACGATGCTGCTGGGCGACCAGGGCGCCGAGGTGGTCAAGATCGAGCGGCCGGTGGTCGGGGACGACACCCGGCGCC
AGTCCAACCCGATGGTGGGTACGGAGAACTCCGCGTTCTTGGCGGTCAACCGCAACAAGCGCAGCGTGGCGGTCGACCTG
CGCGCCGAGGCGGGGGTCGAGGTGGTGCGGCGGCTGGTCGCGGTCAGCGACGTGGTCGTGGAGAACTTCCGGCCCGGCAA
GGCCGAGCAGATGGGGCTGGGCTACGAGCAGCTGCGCGAGCTCAACCCGGGGCTGGTCTACTGCTCGATCTCGGGGTGGG
GCAGCGACGGGCCCTACGCCGCGCGGGGTGGGTACGCCTCGACCGCCGAGGCCGCCGGCGGGCTGATGAGCGTCACCGGC
GAGCGCGGCCGGGGCCCGGTCAAGGTCGGGGTCTCCATCGTGGACTCCCTGACCGGCCTGTACGCCAAGGACGCCATCAC
CGCCGCCCTCCTGGCCCGCGTCCGCACCGGCGTGGGCCAGAAGGTCGAGACCTCACTGCTGGAGTCGACCGTCTCCATCC
TGTCGATGTCGGCCTACGCCTACCTCCTCGGCGGCGTCGTCGCCGGCCGCTGGGGCTCCGAGCACCAGTGGAACGTCCCC
TGGAAGGCCTTCGAGACCACCGACGGCTACGTCGTGGTGGCGAGCAGCTCCGAGGAGCAGTGGCGCAAGATCTGCGTGGG
CATCGAGCGGCCCGACCTGCTCGAGGACCCCCGGTTCACCACCATGGCCGACCGCGCCGCGCACCGCGAGATCCTCTACG
CCCTCCTCGACGAGGTCTTCGCCACCCACACCACCCACGACTGGGTCGCGCGCCTGGACGCCGTCGGCGCCGCCGCCGCC
CCCGTCAACACCATCGACCAGGTCTTCGCCGACCCCCAGGTCCTGGCCCGCGACATGCTCCAGAGCGTCGAACACCCCAC
CCTGGGCCCGATCGCCCAGGTCGGCCACGCCCAGAAGCTCCACGGCACCCCCCACCAGATCACCCTCCCCCCGCCCCTGC
TCGGCCAGCACACCCGCGAGGTCCTCACCGACCTCGGCGGCTACACCCCCGACGAGATCGACGAGCTCGCCCGCGACGGG
GTGGTGGGTGTGGCCGACCACCCCGCCGCGACGGCGTGA

Upstream 100 bases:

>100_bases
ATTTCTGTGACCGACGCCATACCCGACCGGGTGCCTTGACGACGGAAACCCAGGCCTGCAACACTCGTTCGTAGACTGTA
GACAAATGAGAGAGGCGACC

Downstream 100 bases:

>100_bases
GAGGACGACCATGACGCTGGCACCCGACGAGCTCGAGGAGATGGCCGCCACCACGCGGCGGTTCATCCGGGAGCGTATCC
ACCCCATCGAGCAGGAGGTC

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MVKAEAAVLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVGTENSAFLAVNRNKRSVAVDL
RAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRELNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTG
ERGRGPVKVGVSIVDSLTGLYAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWNVP
WKAFETTDGYVVVASSSEEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVFATHTTHDWVARLDAVGAAAA
PVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKLHGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELARDG
VVGVADHPAATA

Sequences:

>Translated_412_residues
MVKAEAAVLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVGTENSAFLAVNRNKRSVAVDL
RAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRELNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTG
ERGRGPVKVGVSIVDSLTGLYAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWNVP
WKAFETTDGYVVVASSSEEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVFATHTTHDWVARLDAVGAAAA
PVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKLHGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELARDG
VVGVADHPAATA
>Mature_412_residues
MVKAEAAVLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVGTENSAFLAVNRNKRSVAVDL
RAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRELNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTG
ERGRGPVKVGVSIVDSLTGLYAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWNVP
WKAFETTDGYVVVASSSEEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVFATHTTHDWVARLDAVGAAAA
PVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKLHGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELARDG
VVGVADHPAATA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=43.7974683544304, Blast_Score=351, Evalue=8e-97,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=41.0926365795724, Blast_Score=337, Evalue=1e-92,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=38.7341772151899, Blast_Score=294, Evalue=1e-79,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=36.5795724465558, Blast_Score=278, Evalue=5e-75,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=29, Blast_Score=146, Evalue=3e-35,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=29, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=31.5384615384615, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=31.5384615384615, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=37.956204379562, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=37.956204379562, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI87082093, Length=331, Percent_Identity=33.5347432024169, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI1788717, Length=415, Percent_Identity=31.566265060241, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1786222, Length=417, Percent_Identity=25.8992805755396, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=326, Percent_Identity=26.3803680981595, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=334, Percent_Identity=24.251497005988, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=43.2911392405063, Blast_Score=338, Evalue=5e-93,
Organism=Drosophila melanogaster, GI24585488, Length=344, Percent_Identity=28.1976744186047, Blast_Score=124, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43945; Mature: 43945

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKAEAAVLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVG
CCCCCCEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC
TENSAFLAVNRNKRSVAVDLRAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRE
CCCCEEEEEECCCCEEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHH
LNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTGERGRGPVKVGVSIVDSLTGL
CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
YAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWNVP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
WKAFETTDGYVVVASSSEEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVF
CEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ATHTTHDWVARLDAVGAAAAPVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKL
HHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHH
HGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELARDGVVGVADHPAATA
CCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCCC
>Mature Secondary Structure
MVKAEAAVLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVG
CCCCCCEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC
TENSAFLAVNRNKRSVAVDLRAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRE
CCCCEEEEEECCCCEEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHH
LNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTGERGRGPVKVGVSIVDSLTGL
CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
YAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWNVP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
WKAFETTDGYVVVASSSEEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVF
CEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ATHTTHDWVARLDAVGAAAAPVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKL
HHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHH
HGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELARDGVVGVADHPAATA
CCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]