Click here to switch to the map view.

The map label for this gene is yhjC [C]

Identifier: 119387016

GI number: 119387016

Start: 1490452

End: 1491363

Strand: Direct

Name: yhjC [C]

Synonym: Pden_4311

Alternate gene names: 119387016

Gene position: 1490452-1491363 (Clockwise)

Preceding gene: 119387013

Following gene: 119387027

Centisome position: 86.15

GC content: 69.08

Gene sequence:

>912_bases
ATGGACAGGATCGACGGCATCCGCGCCTTTGTCGCCGTGGTCGATGCAGGATCGTTCACCCGCGCGGGCGAGCGGCTGGG
GATCTCGAACAAGCTGGTCAGCAAATATGTCGCGGCGCTGGAGGGGCAGCAGGGCGTCACGCTGCTTAACCGCACCACCC
GCGCGCTGTCGCTGACCCCGGCGGGCGAGCGCTACCTGACCGCCGCCCGCCGCGTGCTGGCGGCGGTCGAGGAACTGGAT
GCGCAGGCCCATGCCGAGGAGGGTGCGCTGACGGGCCGGCTGCGCATCACCGCACCCGTCGCCTTTGGCGAGATGTTCGC
GACCACCCTGACCCGCGATTTTGCCCGTGTGCATCCGGGCATCGATATCGACCTGAACCTGTCGGATCGCTATGTCGACC
TGGCGGCCGAGGGCTTCGACCTGGCGCTGCGCATCGGCCAGCTTCCCGATTCCAGCCTGATCGCCCGCCGCATCGGCCAG
ACCGAGACCTGGGTGGTGGCCAGCCCCGCCTATCTGGCCGCGCATCCACGCCCGAACCGGCCCGAGGATCTGCGCGACCA
TGTGAACATCCGCGACAGCAATGCCCAGAATCCGGGCCGGGCCGTCTTTCTGATCGAGGGCAAGGCGGTCAGCGTCCCCT
TGCCCGGCCGCATCACGGTCAACAGCGCCCAAGCCGTGCGGCGGTTGGTGCTGGAGGGCGAGGGCGTCGCGCTGATCCCC
AGCTTCGTCGTCGCCCGCGACGTGGCCGAGGGCCGGCTGGAACGACTGCTGCCCGGTTTCGTCCGCCCGCAACTGGACAT
CCAGGCACTGTATCTGCCGCGACCCTTCCTGCCGCCACGGCTGACGGCCTATCTGGACCACCTGCGGATGGGGCTCAGCC
CGCTGCTGAAAGCACCGCGCCCGGATTCATGA

Upstream 100 bases:

>100_bases
TGTTTCCTTGCAACTGTTCGTTGCGCATCAGATAGCCCTTGGCCATTGTCGCGAAAATTGCCATATTCGTGGAAACATTG
TCGCCACTTTGGGGATGCAG

Downstream 100 bases:

>100_bases
TGCCCAGCGGATCGAGCGCCGCCTTGATCGCTCGCATCGCCGCCAGCCGCACCGGATCGCCCCAGCGGGCCAGATCGCCG
GTCTTCAGCCGCCCCACGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDRIDGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTPAGERYLTAARRVLAAVEELD
AQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPGIDIDLNLSDRYVDLAAEGFDLALRIGQLPDSSLIARRIGQ
TETWVVASPAYLAAHPRPNRPEDLRDHVNIRDSNAQNPGRAVFLIEGKAVSVPLPGRITVNSAQAVRRLVLEGEGVALIP
SFVVARDVAEGRLERLLPGFVRPQLDIQALYLPRPFLPPRLTAYLDHLRMGLSPLLKAPRPDS

Sequences:

>Translated_303_residues
MDRIDGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTPAGERYLTAARRVLAAVEELD
AQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPGIDIDLNLSDRYVDLAAEGFDLALRIGQLPDSSLIARRIGQ
TETWVVASPAYLAAHPRPNRPEDLRDHVNIRDSNAQNPGRAVFLIEGKAVSVPLPGRITVNSAQAVRRLVLEGEGVALIP
SFVVARDVAEGRLERLLPGFVRPQLDIQALYLPRPFLPPRLTAYLDHLRMGLSPLLKAPRPDS
>Mature_303_residues
MDRIDGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTPAGERYLTAARRVLAAVEELD
AQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPGIDIDLNLSDRYVDLAAEGFDLALRIGQLPDSSLIARRIGQ
TETWVVASPAYLAAHPRPNRPEDLRDHVNIRDSNAQNPGRAVFLIEGKAVSVPLPGRITVNSAQAVRRLVLEGEGVALIP
SFVVARDVAEGRLERLLPGFVRPQLDIQALYLPRPFLPPRLTAYLDHLRMGLSPLLKAPRPDS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=32.9931972789116, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=32.4137931034483, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1786401, Length=281, Percent_Identity=31.6725978647687, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI87081978, Length=273, Percent_Identity=30.03663003663, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=27.8169014084507, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787589, Length=275, Percent_Identity=30.5454545454545, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789440, Length=268, Percent_Identity=26.865671641791, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=26.984126984127, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=28.2828282828283, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786713, Length=146, Percent_Identity=31.5068493150685, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787879, Length=151, Percent_Identity=35.0993377483444, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32996; Mature: 32996

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTP
CCCHHHHHHHHHHHCCCCCHHCHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCCEEEECC
AGERYLTAARRVLAAVEELDAQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCC
IDIDLNLSDRYVDLAAEGFDLALRIGQLPDSSLIARRIGQTETWVVASPAYLAAHPRPNR
CEEEECCCCCEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEECCCEEECCCCCCC
PEDLRDHVNIRDSNAQNPGRAVFLIEGKAVSVPLPGRITVNSAQAVRRLVLEGEGVALIP
CHHHHHCCCCCCCCCCCCCCEEEEEECCEEEECCCCEEEECHHHHHHHHHHCCCCEEEHH
SFVVARDVAEGRLERLLPGFVRPQLDIQALYLPRPFLPPRLTAYLDHLRMGLSPLLKAPR
HHHHHHHHHHHHHHHHCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCHHHHHCCCC
PDS
CCC
>Mature Secondary Structure
MDRIDGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTP
CCCHHHHHHHHHHHCCCCCHHCHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCCEEEECC
AGERYLTAARRVLAAVEELDAQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCC
IDIDLNLSDRYVDLAAEGFDLALRIGQLPDSSLIARRIGQTETWVVASPAYLAAHPRPNR
CEEEECCCCCEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEECCCEEECCCCCCC
PEDLRDHVNIRDSNAQNPGRAVFLIEGKAVSVPLPGRITVNSAQAVRRLVLEGEGVALIP
CHHHHHCCCCCCCCCCCCCCEEEEEECCEEEECCCCEEEECHHHHHHHHHHCCCCEEEHH
SFVVARDVAEGRLERLLPGFVRPQLDIQALYLPRPFLPPRLTAYLDHLRMGLSPLLKAPR
HHHHHHHHHHHHHHHHCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCHHHHHCCCC
PDS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]