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The map label for this gene is ydiU [C]

Identifier: 119386765

GI number: 119386765

Start: 1211023

End: 1212438

Strand: Direct

Name: ydiU [C]

Synonym: Pden_4058

Alternate gene names: 119386765

Gene position: 1211023-1212438 (Clockwise)

Preceding gene: 119386764

Following gene: 119386766

Centisome position: 70.0

GC content: 70.27

Gene sequence:

>1416_bases
ATGATCCGCTTCGACAACAGCTATGCCCGACTGCCCGAAGGTTTCTTTACCCGCACCCGCCCGACGCCGGTGCGCGATCC
CAAGCTGGTCGCGCTGAACCGGCCGCTGGCCGAGCGCCTGGGCTTCGACGCCGTCTGGCTTGCCGGCCCCGAGGGGGTGG
CGATGCTGGCCGGAAACACCCTGCCCGAGGGGGCCGAGCCCATCGCCCAGGCCTATGCCGGCCATCAGTTCGGCGGCTTC
GTGCCGCAGCTTGGCGACGGGCGCGCGGTCCTGCTGGGCGAGGTGGTCGCGCCGGATGGCGCACGCTTCGACATCCAGCT
CAAGGGCGCGGGTCCGACGCCGTTCTCGCGCCGGGGCGACGGGCGGGCCTGGCTGGGGCCGGTGCTGCGCGAATATCTGG
TCAGCGAGTTCATGGCGGCCTTCGGCATCCCGACCACGCGGGCCCTGGCGGCCGTCACCACCGGCGAGACGGTGATCCGC
GAGACGCTGCTGCCCGGCGCGGTGCTGACCCGCGTCGCCGCCAGCCATATCCGCGTCGGCACCTTCGAGTTCTATGCCGC
GCGCGGCGACCGGCAACGGTTGCAACTGCTGGCCGATCACGTCATCGCCCGGCACTATCCCGATGCCTCGGGCGCGGCCG
ACCTGCTGCAGCGCGTGGTCGAGCGGCAGGCGGCGACCATCGCCGGCTGGATGGCGCTCGGCTTCATCCACGGGGTGATG
AATACCGACAACATGTCGGTCTCGGGCGAGACCATCGATTACGGCCCCTGCGCCTTCATGGACGGCTACCGGCCCGACAA
GGTGTTCAGCTCGATCGACGCCCATGGCCGCTATGCCTGGAACGAACAGCCGAACATCGCGGTCTGGAACCTGGCGCAAT
TCGCCAGTTGCCTGGTGCCTCTGATGGGCAATGACGACGCGGCGGTGGCCGAAGCGACGCGTATCGTCCACAGCTTTCCC
GAACTCTATCAGGCCGAATGGCTCAGGCGCTTTGCCGCCAAGCTGGGCATCGCCGCCCCACGGCCCGAGGACCGCGCGCT
CATCGAGCGACTGCTGACGCTGATGGCGGCCGACGAGGCGGATTTCACCCGCAGCTTCGCCGGGCTGGCGGATGGCCGCG
CACGCGACGAATTCAAGGCGCCCGAGCAGTTCGACGCCTGGGCCGAGGGCTGGCAGGCGCGCATCCGCGACCTTTCCGAC
GCGGCGCAGGTCATGGCACGCGCCAATCCGTGCCGCATCCCGCGCAACCACCGCATCGAGGAAGTGATCGCCGCCGGGCG
CGAGGGCGATTACGCGCCCTTCCATGCGCTCGACGCGGCGCTGCGCGCACCCTTCGAGGACCGGCCGGAATGGGAGGGCT
ATGCGCTGGCCCCGCAGCCCGACGAGATCGTCCGCCGCACCTTCTGCGGCACCTGA

Upstream 100 bases:

>100_bases
TCATCGTGAACCTGTTCTCGACCAGCGTGACGCATTGAGCCCGTTCCGCCCTTAACATTCCGGCAATCGCGGTTAGATAA
TGTCCGAATGGAGGGCCGCG

Downstream 100 bases:

>100_bases
GCAGCAGCGAAAGGCCCCATGCCGAAAAGCCCCGACCACCTGAGACTGGCCAGCTATAACCTGCACAAGTGCCGCGGCAT
GACCGGCCCGCACGCACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MIRFDNSYARLPEGFFTRTRPTPVRDPKLVALNRPLAERLGFDAVWLAGPEGVAMLAGNTLPEGAEPIAQAYAGHQFGGF
VPQLGDGRAVLLGEVVAPDGARFDIQLKGAGPTPFSRRGDGRAWLGPVLREYLVSEFMAAFGIPTTRALAAVTTGETVIR
ETLLPGAVLTRVAASHIRVGTFEFYAARGDRQRLQLLADHVIARHYPDASGAADLLQRVVERQAATIAGWMALGFIHGVM
NTDNMSVSGETIDYGPCAFMDGYRPDKVFSSIDAHGRYAWNEQPNIAVWNLAQFASCLVPLMGNDDAAVAEATRIVHSFP
ELYQAEWLRRFAAKLGIAAPRPEDRALIERLLTLMAADEADFTRSFAGLADGRARDEFKAPEQFDAWAEGWQARIRDLSD
AAQVMARANPCRIPRNHRIEEVIAAGREGDYAPFHALDAALRAPFEDRPEWEGYALAPQPDEIVRRTFCGT

Sequences:

>Translated_471_residues
MIRFDNSYARLPEGFFTRTRPTPVRDPKLVALNRPLAERLGFDAVWLAGPEGVAMLAGNTLPEGAEPIAQAYAGHQFGGF
VPQLGDGRAVLLGEVVAPDGARFDIQLKGAGPTPFSRRGDGRAWLGPVLREYLVSEFMAAFGIPTTRALAAVTTGETVIR
ETLLPGAVLTRVAASHIRVGTFEFYAARGDRQRLQLLADHVIARHYPDASGAADLLQRVVERQAATIAGWMALGFIHGVM
NTDNMSVSGETIDYGPCAFMDGYRPDKVFSSIDAHGRYAWNEQPNIAVWNLAQFASCLVPLMGNDDAAVAEATRIVHSFP
ELYQAEWLRRFAAKLGIAAPRPEDRALIERLLTLMAADEADFTRSFAGLADGRARDEFKAPEQFDAWAEGWQARIRDLSD
AAQVMARANPCRIPRNHRIEEVIAAGREGDYAPFHALDAALRAPFEDRPEWEGYALAPQPDEIVRRTFCGT
>Mature_471_residues
MIRFDNSYARLPEGFFTRTRPTPVRDPKLVALNRPLAERLGFDAVWLAGPEGVAMLAGNTLPEGAEPIAQAYAGHQFGGF
VPQLGDGRAVLLGEVVAPDGARFDIQLKGAGPTPFSRRGDGRAWLGPVLREYLVSEFMAAFGIPTTRALAAVTTGETVIR
ETLLPGAVLTRVAASHIRVGTFEFYAARGDRQRLQLLADHVIARHYPDASGAADLLQRVVERQAATIAGWMALGFIHGVM
NTDNMSVSGETIDYGPCAFMDGYRPDKVFSSIDAHGRYAWNEQPNIAVWNLAQFASCLVPLMGNDDAAVAEATRIVHSFP
ELYQAEWLRRFAAKLGIAAPRPEDRALIERLLTLMAADEADFTRSFAGLADGRARDEFKAPEQFDAWAEGWQARIRDLSD
AAQVMARANPCRIPRNHRIEEVIAAGREGDYAPFHALDAALRAPFEDRPEWEGYALAPQPDEIVRRTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=392, Percent_Identity=42.8571428571429, Blast_Score=275, Evalue=6e-74,
Organism=Escherichia coli, GI1787999, Length=456, Percent_Identity=41.6666666666667, Blast_Score=315, Evalue=3e-87,
Organism=Saccharomyces cerevisiae, GI6325034, Length=285, Percent_Identity=36.140350877193, Blast_Score=166, Evalue=6e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 51673; Mature: 51673

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFDNSYARLPEGFFTRTRPTPVRDPKLVALNRPLAERLGFDAVWLAGPEGVAMLAGNT
CCEECCCHHHCCCCHHCCCCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCCEEEEECCC
LPEGAEPIAQAYAGHQFGGFVPQLGDGRAVLLGEVVAPDGARFDIQLKGAGPTPFSRRGD
CCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCC
GRAWLGPVLREYLVSEFMAAFGIPTTRALAAVTTGETVIRETLLPGAVLTRVAASHIRVG
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHEEC
TFEFYAARGDRQRLQLLADHVIARHYPDASGAADLLQRVVERQAATIAGWMALGFIHGVM
EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NTDNMSVSGETIDYGPCAFMDGYRPDKVFSSIDAHGRYAWNEQPNIAVWNLAQFASCLVP
CCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHH
LMGNDDAAVAEATRIVHSFPELYQAEWLRRFAAKLGIAAPRPEDRALIERLLTLMAADEA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH
DFTRSFAGLADGRARDEFKAPEQFDAWAEGWQARIRDLSDAAQVMARANPCRIPRNHRIE
HHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
EVIAAGREGDYAPFHALDAALRAPFEDRPEWEGYALAPQPDEIVRRTFCGT
HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIRFDNSYARLPEGFFTRTRPTPVRDPKLVALNRPLAERLGFDAVWLAGPEGVAMLAGNT
CCEECCCHHHCCCCHHCCCCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCCEEEEECCC
LPEGAEPIAQAYAGHQFGGFVPQLGDGRAVLLGEVVAPDGARFDIQLKGAGPTPFSRRGD
CCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCC
GRAWLGPVLREYLVSEFMAAFGIPTTRALAAVTTGETVIRETLLPGAVLTRVAASHIRVG
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHEEC
TFEFYAARGDRQRLQLLADHVIARHYPDASGAADLLQRVVERQAATIAGWMALGFIHGVM
EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NTDNMSVSGETIDYGPCAFMDGYRPDKVFSSIDAHGRYAWNEQPNIAVWNLAQFASCLVP
CCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHH
LMGNDDAAVAEATRIVHSFPELYQAEWLRRFAAKLGIAAPRPEDRALIERLLTLMAADEA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH
DFTRSFAGLADGRARDEFKAPEQFDAWAEGWQARIRDLSDAAQVMARANPCRIPRNHRIE
HHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
EVIAAGREGDYAPFHALDAALRAPFEDRPEWEGYALAPQPDEIVRRTFCGT
HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA