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The map label for this gene is 119386658

Identifier: 119386658

GI number: 119386658

Start: 1086199

End: 1087281

Strand: Direct

Name: 119386658

Synonym: Pden_3951

Alternate gene names: NA

Gene position: 1086199-1087281 (Clockwise)

Preceding gene: 119386657

Following gene: 119386661

Centisome position: 62.78

GC content: 70.27

Gene sequence:

>1083_bases
ATGAGCCTGCCACCCCGGAACCCCGACGAGATCCTGCGCGCCCGCGGCGCCGACTCGCGCCCCGCCGCGCGGTTCGAGCC
CTACCGGACCGAGCGCGAGGACGACGGCTGGGACATACCCGAGGACCAAGCTCTGCTGCGCACCGAAATCACGCAGGAGC
GGGCGCGCTCGATCATTACCCGCAACACGTCGCCCGACATCCCCTTCGACCGCTCGCTCAACCCGTATCGCGGCTGCGAG
CATGGCTGCATCTATTGCTTCGCCCGACCGAGCCATGCCTATCTGGGCCTGTCGCCCGGGCTGGATTTCGAGACGCGAAT
CGTGGCCAAGCCCAACGCCCCCGAACTGCTCGCGGCCGAGATCGGCAGGCGGGGCTATGCCGTCGCGCCCATCGCCTTTG
GCACCAATACCGACCCCTACCAGCCCATCGAGGCCAAGCTGGGCATCATGCGCGGCTGCCTGCAGGTGTTGCATGACTGG
AACCACCCGCTGAGCCTGGTGACGCGGGGCGCCACGGTGATGCGCGACGCGGACCTGCTCGGGGCGATGGCGGCCAAGGG
GCAGGCGATGGTCTGCATTTCCCTGACCACGCTGGACGCGGAACTGGCGCGGCAGATGGAGCCGCGCGCGCCGGCGCCCG
CGACCCGGCTGCGGATGATCCGGGTGCTTTCGGATGTCGGCGTGCCGGTGCGGGTCATGGTCGCGCCGATCATCCCGGTT
CTGACCGAGCATGAGCTGGAGCGCATCATGCAGGCCGCCCGCGACGCCGGGGCAAGTGCCGCCGGCATGATCCCGATCCG
CCTGCCGCTGGAGGTGGCGCCGCTGTTCCGCGACTGGCTGGAGCGCCACCACCCCGGCAAGGCGGCGCATGTGATGGCGC
GTATCCAGGCCATGCGCGGCGGGCGCGACAACGACCCGCGCTTTGGCAAGCGCATGCGTGGCGAAGGGCACGAGGCCGAC
CTGCTGCACCAGCGTTTCCGCCTGGCCCGCAAGCGGCTGGGGCTGGTGCGCGAGGCCGAGGTGCTGGATTGCAGCCGCTT
CAGTCCTCCGCCGCGGGCTGGGGACCAATTGACGCTGTTCTGA

Upstream 100 bases:

>100_bases
CGCCTCCGACGAAAAGGCCCGCGGGCGATTAATCCGGCCTGCGCCGCCGGGTTTCCTGCGCGCGCTGGAAAATGTTCTCT
AAATGTTCTAACGTGGCGGT

Downstream 100 bases:

>100_bases
CTATTCCCCCGGTCCCATGACCTCGGCGATGCGGGCCGAGATGCGCTCGGGCGAGGGGCGCGGCCCGCGCGGCGCGGCGA
CCAGCGCGTCGCGCATCGCG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSLPPRNPDEILRARGADSRPAARFEPYRTEREDDGWDIPEDQALLRTEITQERARSIITRNTSPDIPFDRSLNPYRGCE
HGCIYCFARPSHAYLGLSPGLDFETRIVAKPNAPELLAAEIGRRGYAVAPIAFGTNTDPYQPIEAKLGIMRGCLQVLHDW
NHPLSLVTRGATVMRDADLLGAMAAKGQAMVCISLTTLDAELARQMEPRAPAPATRLRMIRVLSDVGVPVRVMVAPIIPV
LTEHELERIMQAARDAGASAAGMIPIRLPLEVAPLFRDWLERHHPGKAAHVMARIQAMRGGRDNDPRFGKRMRGEGHEAD
LLHQRFRLARKRLGLVREAEVLDCSRFSPPPRAGDQLTLF

Sequences:

>Translated_360_residues
MSLPPRNPDEILRARGADSRPAARFEPYRTEREDDGWDIPEDQALLRTEITQERARSIITRNTSPDIPFDRSLNPYRGCE
HGCIYCFARPSHAYLGLSPGLDFETRIVAKPNAPELLAAEIGRRGYAVAPIAFGTNTDPYQPIEAKLGIMRGCLQVLHDW
NHPLSLVTRGATVMRDADLLGAMAAKGQAMVCISLTTLDAELARQMEPRAPAPATRLRMIRVLSDVGVPVRVMVAPIIPV
LTEHELERIMQAARDAGASAAGMIPIRLPLEVAPLFRDWLERHHPGKAAHVMARIQAMRGGRDNDPRFGKRMRGEGHEAD
LLHQRFRLARKRLGLVREAEVLDCSRFSPPPRAGDQLTLF
>Mature_359_residues
SLPPRNPDEILRARGADSRPAARFEPYRTEREDDGWDIPEDQALLRTEITQERARSIITRNTSPDIPFDRSLNPYRGCEH
GCIYCFARPSHAYLGLSPGLDFETRIVAKPNAPELLAAEIGRRGYAVAPIAFGTNTDPYQPIEAKLGIMRGCLQVLHDWN
HPLSLVTRGATVMRDADLLGAMAAKGQAMVCISLTTLDAELARQMEPRAPAPATRLRMIRVLSDVGVPVRVMVAPIIPVL
TEHELERIMQAARDAGASAAGMIPIRLPLEVAPLFRDWLERHHPGKAAHVMARIQAMRGGRDNDPRFGKRMRGEGHEADL
LHQRFRLARKRLGLVREAEVLDCSRFSPPPRAGDQLTLF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40111; Mature: 39980

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPPRNPDEILRARGADSRPAARFEPYRTEREDDGWDIPEDQALLRTEITQERARSIIT
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RNTSPDIPFDRSLNPYRGCEHGCIYCFARPSHAYLGLSPGLDFETRIVAKPNAPELLAAE
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEECCCCCHHHHHH
IGRRGYAVAPIAFGTNTDPYQPIEAKLGIMRGCLQVLHDWNHPLSLVTRGATVMRDADLL
HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHH
GAMAAKGQAMVCISLTTLDAELARQMEPRAPAPATRLRMIRVLSDVGVPVRVMVAPIIPV
HHHHCCCCEEEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LTEHELERIMQAARDAGASAAGMIPIRLPLEVAPLFRDWLERHHPGKAAHVMARIQAMRG
HHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GRDNDPRFGKRMRGEGHEADLLHQRFRLARKRLGLVREAEVLDCSRFSPPPRAGDQLTLF
CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEC
>Mature Secondary Structure 
SLPPRNPDEILRARGADSRPAARFEPYRTEREDDGWDIPEDQALLRTEITQERARSIIT
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RNTSPDIPFDRSLNPYRGCEHGCIYCFARPSHAYLGLSPGLDFETRIVAKPNAPELLAAE
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEECCCCCHHHHHH
IGRRGYAVAPIAFGTNTDPYQPIEAKLGIMRGCLQVLHDWNHPLSLVTRGATVMRDADLL
HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHH
GAMAAKGQAMVCISLTTLDAELARQMEPRAPAPATRLRMIRVLSDVGVPVRVMVAPIIPV
HHHHCCCCEEEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LTEHELERIMQAARDAGASAAGMIPIRLPLEVAPLFRDWLERHHPGKAAHVMARIQAMRG
HHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GRDNDPRFGKRMRGEGHEADLLHQRFRLARKRLGLVREAEVLDCSRFSPPPRAGDQLTLF
CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]