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The map label for this gene is ypfJ [H]

Identifier: 119386575

GI number: 119386575

Start: 1002716

End: 1003567

Strand: Direct

Name: ypfJ [H]

Synonym: Pden_3868

Alternate gene names: 119386575

Gene position: 1002716-1003567 (Clockwise)

Preceding gene: 119386570

Following gene: 119386577

Centisome position: 57.96

GC content: 67.84

Gene sequence:

>852_bases
ATGGAGTGGCGGGGCAGACGGGGCAGCCGGAATGTCGAGGACCGGCGCGGCATGGGCCGGGCGGCCGGCGCGGGCGGCAT
GGGTGTCGTCGGCGTGCTGGTGGTTCTGGCGGTGGGTTATTTCTTCGGCATCGACATCTCGCCCATCGTCGGCGCCATCG
ACGATGGCGGCCGGCAGGGAGAACCGCGGGCGCTTACGCAGGTAGAGCAGGAGATCGGCCAGTTCGTTTCGGTCGTGCTG
GCCGATACCGAGGAGGTCTGGGCCGGCGTGCTGCCCGGCCAGGCCGGGACGCGCTATCAGGATCCGGGGCTGGTGCTGTT
CTCGGGCGCGGTGCAATCGGCCTGCGGCGGTGCTTCGGCGGCGATGGGGCCGTTCTATTGTCCGAACGACCGCAAGATCT
ACCTGGACACGGATTTCTTCCGCACGATGGCCGGCAAGATGGGGGCAGGGGGCGATTTCGCCTATGCTTATGTCATTGCC
CATGAGGTCGGGCATCATGTGCAGAACCTGCTGGGCACGCTTTCCGAGGTGAACGGGCTGCGCGCCCGCGTCAGCCAGCG
CGATTCGAACCGGCTGTCGGTGCTGACCGAATTGCAGGCGGATTGCTATGCCGGGATCTGGGCAAGGCAGGCGAGCGAGC
AGTTCGGCAGCATCGAGGAGGGCGATATCGACGAGGCGATCAACGCGGCTGCTGCGGTGGGCGACGACACGCTGATGGAA
AGCGCCGGCCGGGCGGTGGTGCCCGACGCCTTTACCCATGGCTCGGCCGCCGAGCGCCAGACCTGGTTCAAGCGCGGCTT
CGCCTCGGGGCAGATGGGGCAATGCGACACGTTCGGGGCCGCGGGGATGTAG

Upstream 100 bases:

>100_bases
GGCTGGGACCGGAACTGTCAACCCTGCGCAGGTGTTGCGCCCTGCCGGGGTTGCGGTAACCTTGGCGTGAAGGGCCGGAT
CATGGCGGAGGGGGTGGCGG

Downstream 100 bases:

>100_bases
GGCGGCTACGGTGGCGCGTGTGGCGCGGTCGCATGAGTATTTGCAGAACGAAGAAGCGCGGGGGTGCCCGAATCGGACCG
GCCGGCGCGAGCGGTTGCGG

Product: zinc metallopeptidase putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MEWRGRRGSRNVEDRRGMGRAAGAGGMGVVGVLVVLAVGYFFGIDISPIVGAIDDGGRQGEPRALTQVEQEIGQFVSVVL
ADTEEVWAGVLPGQAGTRYQDPGLVLFSGAVQSACGGASAAMGPFYCPNDRKIYLDTDFFRTMAGKMGAGGDFAYAYVIA
HEVGHHVQNLLGTLSEVNGLRARVSQRDSNRLSVLTELQADCYAGIWARQASEQFGSIEEGDIDEAINAAAAVGDDTLME
SAGRAVVPDAFTHGSAAERQTWFKRGFASGQMGQCDTFGAAGM

Sequences:

>Translated_283_residues
MEWRGRRGSRNVEDRRGMGRAAGAGGMGVVGVLVVLAVGYFFGIDISPIVGAIDDGGRQGEPRALTQVEQEIGQFVSVVL
ADTEEVWAGVLPGQAGTRYQDPGLVLFSGAVQSACGGASAAMGPFYCPNDRKIYLDTDFFRTMAGKMGAGGDFAYAYVIA
HEVGHHVQNLLGTLSEVNGLRARVSQRDSNRLSVLTELQADCYAGIWARQASEQFGSIEEGDIDEAINAAAAVGDDTLME
SAGRAVVPDAFTHGSAAERQTWFKRGFASGQMGQCDTFGAAGM
>Mature_283_residues
MEWRGRRGSRNVEDRRGMGRAAGAGGMGVVGVLVVLAVGYFFGIDISPIVGAIDDGGRQGEPRALTQVEQEIGQFVSVVL
ADTEEVWAGVLPGQAGTRYQDPGLVLFSGAVQSACGGASAAMGPFYCPNDRKIYLDTDFFRTMAGKMGAGGDFAYAYVIA
HEVGHHVQNLLGTLSEVNGLRARVSQRDSNRLSVLTELQADCYAGIWARQASEQFGSIEEGDIDEAINAAAAVGDDTLME
SAGRAVVPDAFTHGSAAERQTWFKRGFASGQMGQCDTFGAAGM

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=290, Percent_Identity=44.8275862068966, Blast_Score=258, Evalue=4e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 29871; Mature: 29871

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]