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The map label for this gene is ypdF [C]

Identifier: 119386121

GI number: 119386121

Start: 553476

End: 554615

Strand: Direct

Name: ypdF [C]

Synonym: Pden_3409

Alternate gene names: 119386121

Gene position: 553476-554615 (Clockwise)

Preceding gene: 119386120

Following gene: 119386127

Centisome position: 31.99

GC content: 63.33

Gene sequence:

>1140_bases
ATGCAGCGGCGCCAGGACGACATGCGCCGCTGGATGGCCGGGAACGGCGTCGATGCGGCACTGTTCACCTCGTATCACTG
CATCAACTATTATTCGGGCTGGCTCTACTGCTATTTCGGCCGCAAATACGGCATGGTCATCACCCAGGACGCGGCGACCA
CCATCAGCGCCGGCATCGATGGCGGTCAGCCGTGGCGGCGCAGCTTTGGCGGCAACGTCACCTATACCGATTGGCGGCGC
GACAATTATTTCCGCGCGGTGCGGCAGCTGACCCCCGGCGTCAAGCGGCTGGGAATCGAGTTCGACCATGTCAACATGGA
CTTGCGCCGCCAGCTTGAGGCAGCCCTGCCGGGGGTGGAATTCGTCGATGTCGGCCAGCCCTCGATGTGGATGCGCTCGA
TCAAGTCGGCCGAGGAACACAAGCTGATCCGCGAGGGCGCGCGCATCTGCGACGTGGGCGGCGCGGCGGTGGCGGCTGCG
GTCAAGGCGGGCGTGCCCGAGCACGAGGTCGCCATCGCCTCGACCAATGCCATGATCCGCGAGGTCGCCGCCTCCTTCCC
CTTCGTCGAGCTGATGGATACCTGGACCTGGTTCCAGTCCGGCATCAACACCGACGGGGCGCATAACCCGGTGACGAACA
AGAAGATCGCATCGGGCGAGATCCTGTCGCTGAACTGCTTCCCGATGATCTTCGGCTATTATACCGCGCTGGAACGCACG
ATGTTTTGCGACAGCGTGGACGATGCCAGCCTCGACATCTGGGAAAAGAACGTCGCCGTGCATCGCCGGGGCCTGGAACT
GATCAAGCCCGGTGCGAAATGCAACGAGATCGCATTGGAGCTCAACGACATGTACCGCCAGTGGGATCTGCTGAAATATC
GCAGCTTCGGCTATGGCCACTCCTTCGGCGTCCTGAGCCACTATTACGGGCGCGAGGCCGGGGTCGAGCTGCGCGAGGAC
ATCGAGACCGAGCTGAAGCCCGGCATGGTGGTCTCGATGGAACCGATGGTGATGTTGCCCGAGGGTGCGCCCGGCGCGGG
CGGCTATCGCGAGCATGACATCCTGATCGTGACCGAGGACGGGGCCGATAACATCACCGGGTTCCCCTTCGGCCCCGAGC
ACAACATCATCCGCAACTGA

Upstream 100 bases:

>100_bases
CAGGAAACCGACGGAGGACGGATCTCATGACCGACGACATGCTTCATGTCATGGAATGGCATAATGGCGATAAGGATTTT
CCCCTTTCTCGGATGCCGAG

Downstream 100 bases:

>100_bases
TCCTTTGCGGAACCCCGGAACGGAGAGGCGGGCCCATTTTGGCGGGCCCGCCGCGTCTTGGTCAGGCGGGGCAGGGGGTG
CCGAACTCTGCCCGCAATGC

Product: creatinase

Products: NA

Alternate protein names: Creatine amidinohydrolase [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MQRRQDDMRRWMAGNGVDAALFTSYHCINYYSGWLYCYFGRKYGMVITQDAATTISAGIDGGQPWRRSFGGNVTYTDWRR
DNYFRAVRQLTPGVKRLGIEFDHVNMDLRRQLEAALPGVEFVDVGQPSMWMRSIKSAEEHKLIREGARICDVGGAAVAAA
VKAGVPEHEVAIASTNAMIREVAASFPFVELMDTWTWFQSGINTDGAHNPVTNKKIASGEILSLNCFPMIFGYYTALERT
MFCDSVDDASLDIWEKNVAVHRRGLELIKPGAKCNEIALELNDMYRQWDLLKYRSFGYGHSFGVLSHYYGREAGVELRED
IETELKPGMVVSMEPMVMLPEGAPGAGGYREHDILIVTEDGADNITGFPFGPEHNIIRN

Sequences:

>Translated_379_residues
MQRRQDDMRRWMAGNGVDAALFTSYHCINYYSGWLYCYFGRKYGMVITQDAATTISAGIDGGQPWRRSFGGNVTYTDWRR
DNYFRAVRQLTPGVKRLGIEFDHVNMDLRRQLEAALPGVEFVDVGQPSMWMRSIKSAEEHKLIREGARICDVGGAAVAAA
VKAGVPEHEVAIASTNAMIREVAASFPFVELMDTWTWFQSGINTDGAHNPVTNKKIASGEILSLNCFPMIFGYYTALERT
MFCDSVDDASLDIWEKNVAVHRRGLELIKPGAKCNEIALELNDMYRQWDLLKYRSFGYGHSFGVLSHYYGREAGVELRED
IETELKPGMVVSMEPMVMLPEGAPGAGGYREHDILIVTEDGADNITGFPFGPEHNIIRN
>Mature_379_residues
MQRRQDDMRRWMAGNGVDAALFTSYHCINYYSGWLYCYFGRKYGMVITQDAATTISAGIDGGQPWRRSFGGNVTYTDWRR
DNYFRAVRQLTPGVKRLGIEFDHVNMDLRRQLEAALPGVEFVDVGQPSMWMRSIKSAEEHKLIREGARICDVGGAAVAAA
VKAGVPEHEVAIASTNAMIREVAASFPFVELMDTWTWFQSGINTDGAHNPVTNKKIASGEILSLNCFPMIFGYYTALERT
MFCDSVDDASLDIWEKNVAVHRRGLELIKPGAKCNEIALELNDMYRQWDLLKYRSFGYGHSFGVLSHYYGREAGVELRED
IETELKPGMVVSMEPMVMLPEGAPGAGGYREHDILIVTEDGADNITGFPFGPEHNIIRN

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family. Creatinase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=250, Percent_Identity=28, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: =3.5.3.3 [H]

Molecular weight: Translated: 42583; Mature: 42583

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRQDDMRRWMAGNGVDAALFTSYHCINYYSGWLYCYFGRKYGMVITQDAATTISAGID
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCEECEEEECCCHHHHCCCCC
GGQPWRRSFGGNVTYTDWRRDNYFRAVRQLTPGVKRLGIEFDHVNMDLRRQLEAALPGVE
CCCHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHCCEEEECCHHHHHHHHHHCCCCE
FVDVGQPSMWMRSIKSAEEHKLIREGARICDVGGAAVAAAVKAGVPEHEVAIASTNAMIR
EEECCCHHHHHHHHHCHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCHHEEEEHHHHHHH
EVAASFPFVELMDTWTWFQSGINTDGAHNPVTNKKIASGEILSLNCFPMIFGYYTALERT
HHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHHH
MFCDSVDDASLDIWEKNVAVHRRGLELIKPGAKCNEIALELNDMYRQWDLLKYRSFGYGH
HHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SFGVLSHYYGREAGVELREDIETELKPGMVVSMEPMVMLPEGAPGAGGYREHDILIVTED
CHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCCCCEEEEEECC
GADNITGFPFGPEHNIIRN
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQRRQDDMRRWMAGNGVDAALFTSYHCINYYSGWLYCYFGRKYGMVITQDAATTISAGID
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCEECEEEECCCHHHHCCCCC
GGQPWRRSFGGNVTYTDWRRDNYFRAVRQLTPGVKRLGIEFDHVNMDLRRQLEAALPGVE
CCCHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHCCEEEECCHHHHHHHHHHCCCCE
FVDVGQPSMWMRSIKSAEEHKLIREGARICDVGGAAVAAAVKAGVPEHEVAIASTNAMIR
EEECCCHHHHHHHHHCHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCHHEEEEHHHHHHH
EVAASFPFVELMDTWTWFQSGINTDGAHNPVTNKKIASGEILSLNCFPMIFGYYTALERT
HHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHHH
MFCDSVDDASLDIWEKNVAVHRRGLELIKPGAKCNEIALELNDMYRQWDLLKYRSFGYGH
HHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SFGVLSHYYGREAGVELREDIETELKPGMVVSMEPMVMLPEGAPGAGGYREHDILIVTED
CHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCCCCEEEEEECC
GADNITGFPFGPEHNIIRN
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1368564 [H]