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The map label for this gene is trbB [H]

Identifier: 119385916

GI number: 119385916

Start: 359010

End: 360014

Strand: Direct

Name: trbB [H]

Synonym: Pden_3194

Alternate gene names: 119385916

Gene position: 359010-360014 (Clockwise)

Preceding gene: 119385911

Following gene: 119385917

Centisome position: 20.75

GC content: 68.06

Gene sequence:

>1005_bases
ATGGCAGGTTCGGACCACATCGAGGCAAGGGTGGAGCGCGGTGCCCGCATGCTCCGCACCGCGCTCGGACCTGCCATCTC
CGCCCTTTTGCGGGATCCCGACATCGTCGAGGTTATGCTGAACCCGGACGGCCGGATCTGGGTGGATCGGCTGCGCGACG
GGCTCGCCGATACCAACCAAGTCCTGTCCGCATCCGACGGCGAGCGTATCATCCGGCTGGTCGCGCATCACGTCGGCGCC
GAGGTCCATGCGCACAATCCCCGCGTCTCGGCTGAGCTGCCGGAAACGGGAGAACGCTTCGAGGGGCTGCTGCCGCCGGT
CGTCGCCGCGCCCGCCTTCGCCATCCGCAAGCCCGCCGTCGCCGTCTTCAACCTCGACGATTATGTCGACACCGGCATCA
TGACCCGGATGCAGGCCGAGGCGTTGCGTCTCGCAGTCGCGACCCGCGCCAATATCCTCGTCTCGGGCGGCACCTCCACC
GGCAAGACCACGCTGACCAATGCGCTGCTGGCCGAGGTGGCAAAGACGCAGGATCGCGTGGTCATCATCGAGGACACCCG
CGAGCTGCAATGCGCCGCGCCCAATCTGGTGGCGATGCGCACCACGGACGGCGTCGCCACCTTGTCCGATCTGGTGCGCT
CCTCGCTGCGGCTGCGTCCCGACCGCATCCCCATCGGCGAGGTGCGCGGCGCCGAGGCGCTCGACCTCCTGAAAGCCTGG
GGCACCGGCCATCCGGGCGGCATCGGCACCATCCATGCCGGATCCGGCATCGGCGCCCTGCGCCGCCTCGAACAGTTGAT
CCAGGAAGCCGTGATCACCGTGCCCCGTGCCCTGATCGCCGAGACCGTGGATATCGTCGCCGTTCTGTCCGGACGCGGGT
CCGCGCGGCGGCTGGCCGAACTGGTCCGCGTCGAGGGCCTCGGCCCGGACGGCGACTACCGCATCGCTTCCGTCATTTCC
GATACCGACACGTATATCGCAGAAAAAGCTGGAGAACCCGAATGA

Upstream 100 bases:

>100_bases
ACGGCAGCTGAATAGCTGTTGCGCAAACCTGTTTTGAGGCTCTTTTAGTCGACCCCATCCGGGGATCATCTCTCGCCGCC
CCGGAGGAACGGGGGACGGG

Downstream 100 bases:

>100_bases
TCCGTCATGCCCTGCGCATCCGTCATCACGTCGCGACGGCAGCGACCACACTCTATGTCAGCCTGTTCATGGCTCCGGCG
GCCCATGCCGCCGGTTCTTC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MAGSDHIEARVERGARMLRTALGPAISALLRDPDIVEVMLNPDGRIWVDRLRDGLADTNQVLSASDGERIIRLVAHHVGA
EVHAHNPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAVAVFNLDDYVDTGIMTRMQAEALRLAVATRANILVSGGTST
GKTTLTNALLAEVAKTQDRVVIIEDTRELQCAAPNLVAMRTTDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGSGIGALRRLEQLIQEAVITVPRALIAETVDIVAVLSGRGSARRLAELVRVEGLGPDGDYRIASVIS
DTDTYIAEKAGEPE

Sequences:

>Translated_334_residues
MAGSDHIEARVERGARMLRTALGPAISALLRDPDIVEVMLNPDGRIWVDRLRDGLADTNQVLSASDGERIIRLVAHHVGA
EVHAHNPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAVAVFNLDDYVDTGIMTRMQAEALRLAVATRANILVSGGTST
GKTTLTNALLAEVAKTQDRVVIIEDTRELQCAAPNLVAMRTTDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGSGIGALRRLEQLIQEAVITVPRALIAETVDIVAVLSGRGSARRLAELVRVEGLGPDGDYRIASVIS
DTDTYIAEKAGEPE
>Mature_333_residues
AGSDHIEARVERGARMLRTALGPAISALLRDPDIVEVMLNPDGRIWVDRLRDGLADTNQVLSASDGERIIRLVAHHVGAE
VHAHNPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAVAVFNLDDYVDTGIMTRMQAEALRLAVATRANILVSGGTSTG
KTTLTNALLAEVAKTQDRVVIIEDTRELQCAAPNLVAMRTTDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGIGTIHAGSGIGALRRLEQLIQEAVITVPRALIAETVDIVAVLSGRGSARRLAELVRVEGLGPDGDYRIASVISD
TDTYIAEKAGEPE

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35553; Mature: 35422

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSDHIEARVERGARMLRTALGPAISALLRDPDIVEVMLNPDGRIWVDRLRDGLADTNQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHCCCCCHHH
VLSASDGERIIRLVAHHVGAEVHAHNPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAV
HHCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHCCCCE
AVFNLDDYVDTGIMTRMQAEALRLAVATRANILVSGGTSTGKTTLTNALLAEVAKTQDRV
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
VIIEDTRELQCAAPNLVAMRTTDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGSGIGALRRLEQLIQEAVITVPRALIAETVDIVAVLSGRGSARRLAE
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LVRVEGLGPDGDYRIASVISDTDTYIAEKAGEPE
HHHHCCCCCCCCEEHHHHHHCHHHHHHHCCCCCC
>Mature Secondary Structure 
AGSDHIEARVERGARMLRTALGPAISALLRDPDIVEVMLNPDGRIWVDRLRDGLADTNQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHCCCCCHHH
VLSASDGERIIRLVAHHVGAEVHAHNPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAV
HHCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHCCCCE
AVFNLDDYVDTGIMTRMQAEALRLAVATRANILVSGGTSTGKTTLTNALLAEVAKTQDRV
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
VIIEDTRELQCAAPNLVAMRTTDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGSGIGALRRLEQLIQEAVITVPRALIAETVDIVAVLSGRGSARRLAE
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LVRVEGLGPDGDYRIASVISDTDTYIAEKAGEPE
HHHHCCCCCCCCEEHHHHHHCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]