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The map label for this gene is yubD [H]

Identifier: 119385886

GI number: 119385886

Start: 338133

End: 338810

Strand: Direct

Name: yubD [H]

Synonym: Pden_3164

Alternate gene names: 119385886

Gene position: 338133-338810 (Clockwise)

Preceding gene: 119385885

Following gene: 119385887

Centisome position: 19.54

GC content: 66.37

Gene sequence:

>678_bases
ATGACCGGCAAGACCAGCACCCCCCGTAACCTCGTCATCAATGCCGATTGCATCGAGGCGATGCAGGCTTTCGGCAGCGG
TTCGGTGGACTTCATCCTGACCGATCCGCCCTATGTCACCCGCTTCCGCGACCGGCAGGGCCGCACCGTCGCCAACGACG
ACAACGCCCGCTGGCTGCGGCCCGCCTTCGCCCAGATGCACCGGGTCCTGAAGGACGGCGGCTTCTGCGTCAGTTTCTAC
GGCTGGAACAAGGTCGATTTGTTTGTCGAGGCGTGGAAGGCGGCCGGCTTCCGCATCGTCGGGCATCTGGTGTTCCGCAA
GCGTTACGCCTCATCCGCCCGCTTCCTGCGCTACGAGCACGAACAGGCCTATCTGCTGGCCAAGGGCGACCCGGAATCGC
CCGCGCGTCCGGTGCCCGATGTGCTGGACTTTCCCTATACCGGCAACAAGCTGCACCCGACGCAGAAGCCGGTGGCGGCG
CTGCGCAGGCTGATCGGGGCGTTCACGAAGCCCGGCGATCTGGTGCTGGACCCGTTCAGCGGCAGCGGTTCGACCTTGGC
GGCGGCGCATCTGCTGGGCCGCGACTGGCTCGGGGTTGAGCTGGATGTTGAGCATTACCAGACCGCCGGCAAGCGGATGG
CGGCCCTGCAAGAGCGGGACCGGAAGGCGGCGGCATAA

Upstream 100 bases:

>100_bases
TCCGGGGAAACATGCGTTTCCTGAAGTCAGACCGGCGAGGCGCGGCCCATCGGCGGAACAGGGCAAGGACCCTCCGCCCC
GAACCCGAAAGGACAGAGAC

Downstream 100 bases:

>100_bases
GCCCTGCCGACAAGGGTGCCCGTCCCCGAGACGGGCACCACACCCCACAGCTTCACGGAAAGGATTTTGATATGCGCTGG
ATCATTACGAAGGACTATTG

Product: DNA methylase N-4/N-6 domain-containing protein

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTGKTSTPRNLVINADCIEAMQAFGSGSVDFILTDPPYVTRFRDRQGRTVANDDNARWLRPAFAQMHRVLKDGGFCVSFY
GWNKVDLFVEAWKAAGFRIVGHLVFRKRYASSARFLRYEHEQAYLLAKGDPESPARPVPDVLDFPYTGNKLHPTQKPVAA
LRRLIGAFTKPGDLVLDPFSGSGSTLAAAHLLGRDWLGVELDVEHYQTAGKRMAALQERDRKAAA

Sequences:

>Translated_225_residues
MTGKTSTPRNLVINADCIEAMQAFGSGSVDFILTDPPYVTRFRDRQGRTVANDDNARWLRPAFAQMHRVLKDGGFCVSFY
GWNKVDLFVEAWKAAGFRIVGHLVFRKRYASSARFLRYEHEQAYLLAKGDPESPARPVPDVLDFPYTGNKLHPTQKPVAA
LRRLIGAFTKPGDLVLDPFSGSGSTLAAAHLLGRDWLGVELDVEHYQTAGKRMAALQERDRKAAA
>Mature_224_residues
TGKTSTPRNLVINADCIEAMQAFGSGSVDFILTDPPYVTRFRDRQGRTVANDDNARWLRPAFAQMHRVLKDGGFCVSFYG
WNKVDLFVEAWKAAGFRIVGHLVFRKRYASSARFLRYEHEQAYLLAKGDPESPARPVPDVLDFPYTGNKLHPTQKPVAAL
RRLIGAFTKPGDLVLDPFSGSGSTLAAAHLLGRDWLGVELDVEHYQTAGKRMAALQERDRKAAA

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI87082238, Length=243, Percent_Identity=30.0411522633745, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 25082; Mature: 24951

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKTSTPRNLVINADCIEAMQAFGSGSVDFILTDPPYVTRFRDRQGRTVANDDNARWLR
CCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEECCCCCCCHHH
PAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYASSARFLRYEH
HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEC
EQAYLLAKGDPESPARPVPDVLDFPYTGNKLHPTQKPVAALRRLIGAFTKPGDLVLDPFS
CEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
GSGSTLAAAHLLGRDWLGVELDVEHYQTAGKRMAALQERDRKAAA
CCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TGKTSTPRNLVINADCIEAMQAFGSGSVDFILTDPPYVTRFRDRQGRTVANDDNARWLR
CCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEECCCCCCCHHH
PAFAQMHRVLKDGGFCVSFYGWNKVDLFVEAWKAAGFRIVGHLVFRKRYASSARFLRYEH
HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEC
EQAYLLAKGDPESPARPVPDVLDFPYTGNKLHPTQKPVAALRRLIGAFTKPGDLVLDPFS
CEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
GSGSTLAAAHLLGRDWLGVELDVEHYQTAGKRMAALQERDRKAAA
CCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]