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The map label for this gene is cspE [C]

Identifier: 119385865

GI number: 119385865

Start: 322642

End: 322848

Strand: Direct

Name: cspE [C]

Synonym: Pden_3143

Alternate gene names: 119385865

Gene position: 322642-322848 (Clockwise)

Preceding gene: 119385863

Following gene: 119385866

Centisome position: 18.65

GC content: 64.25

Gene sequence:

>207_bases
ATGGCCAATGGCACCGTGAAATGGTTCAACGCCGCCAAGGGCTTCGGCTTCATCGCGCCCGAGCATGGCGGCAAGGACGT
GTTTCTGCACATTTCGGCCCTCGAGCGGGCCGGGCTTAACAGCGTTGCGGATGGTCAGGCCGTGACCTTCGAAATCGAGT
CGGGCCGCGATGGTCGCGAATCGGCCAGCAGGCTGGCGCTCGCCTGA

Upstream 100 bases:

>100_bases
CTCTCTGCATCCTGTCTCCTTTCGGCTTCAGTCTGCTTTTGAACTGACCGGGCCGGGTTGCTGCATTCCGCGAGCGACAA
ATCCACAAGGAGATATCACG

Downstream 100 bases:

>100_bases
TCCTGTCGAACAGCCTGGCCATCTGGCCGGGCTGAACCCCTTCGGGAGACCCGTATGTTGGCCAAGGCGAGAAACCTTTT
CCGCGACCCTGCGCCCCTGA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MANGTVKWFNAAKGFGFIAPEHGGKDVFLHISALERAGLNSVADGQAVTFEIESGRDGRESASRLALA

Sequences:

>Translated_68_residues
MANGTVKWFNAAKGFGFIAPEHGGKDVFLHISALERAGLNSVADGQAVTFEIESGRDGRESASRLALA
>Mature_67_residues
ANGTVKWFNAAKGFGFIAPEHGGKDVFLHISALERAGLNSVADGQAVTFEIESGRDGRESASRLALA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=54.6875, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=53.125, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=50, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=53.2258064516129, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=48.3870967741936, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=46.875, Blast_Score=67, Evalue=1e-13,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=46.875, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7148; Mature: 7017

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTVKWFNAAKGFGFIAPEHGGKDVFLHISALERAGLNSVADGQAVTFEIESGRDGRE
CCCCEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCC
SASRLALA
CCHHCCCC
>Mature Secondary Structure 
ANGTVKWFNAAKGFGFIAPEHGGKDVFLHISALERAGLNSVADGQAVTFEIESGRDGRE
CCCEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCC
SASRLALA
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]