BacMap

Definition	Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession	NC_008687
Length	1,730,097

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The map label for this gene is yusZ [H]

Identifier: 119385839

GI number: 119385839

Start: 301647

End: 302417

Strand: Direct

Name: yusZ [H]

Synonym: Pden_3117

Alternate gene names: 119385839

Gene position: 301647-302417 (Clockwise)

Preceding gene: 119385835

Following gene: 119385841

Centisome position: 17.44

GC content: 66.28

Gene sequence:

>771_bases
ATGCACGCTACATTCCTGCTGTCAACTCAGGAGATCATCATGAACACCGTCCTCATCACCGGCACCTCGTCGGGCTATGG
GCTGGAAACCGCCCGCTATTTCCACGCGCAGGGCTGGCAGGCCATCGCCACCATGCGCACCCCACGCGACGGGCTGTTGC
CCGAAGGCCTGCGCATCCTGCCGCTGGACGTCACCGACCCGGCCAGCATCGCCGCCACCATCGAAGCCGCCGGCCCCATC
GACGTGCTGGTGAACAACGCCGGCATCGGCCTTGTCGGCGCCTTCGAGGCCGCGCCGATGGATTACGTCCGCAAGCTGTT
CGACACCAACACCTTCGGCACCATGGCCATGGTGCAGGCGGTGATCCCGCAGATGCGGGCGCGGCGGTCGGGCGTGATCG
TCAACGTGACCTCCAGCGTGACGCTGGCGCCGATGCCGCTGGCCGCCGCCTATACCGCCAGCAAGCAGGCGATAGAGGGC
TTTACCGGATCGCTGGCGCATGAGCTTGCGGCCTTCGGTGTGCGGGCAAAGCTGGTCGAACCGGGCTATGCCCCGACCAC
GCGGTTTTCACAGAACATCGACTTTGCCATTGAGGACATGATCCCCGAAGCCTATGCCGATTTCGCTGCGCCGATCTTTG
CCGCCTTCGCCAGCCCGGCCCTGACCACCAGGGAAACCGACGTGGCCGAGGCGGTGTTCCTGGCGGCGAATGACACTTCC
GACCGGCTGCGCTATCCGGCCGGACCCGATGCGGTGGCGCTGGCGGCCTGA

Upstream 100 bases:

>100_bases
CGCCTGCGGGCGCAAAAGTTCGATGACCTGAGCAAGTGGATCCGACATTCAGGACTTCCGCAAATTCAATCAGGACTTCT
GATTGGTGATACTCCTGACC

Downstream 100 bases:

>100_bases
CCCATTGTCGGCGGGGGGAAGGACCGCCAGGTTCAGCCCGGCAGCGTGACCACCATGGCACCGCGATCCGTCGCGACGAC
CGTATGCTCGTATTGCACCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MHATFLLSTQEIIMNTVLITGTSSGYGLETARYFHAQGWQAIATMRTPRDGLLPEGLRILPLDVTDPASIAATIEAAGPI
DVLVNNAGIGLVGAFEAAPMDYVRKLFDTNTFGTMAMVQAVIPQMRARRSGVIVNVTSSVTLAPMPLAAAYTASKQAIEG
FTGSLAHELAAFGVRAKLVEPGYAPTTRFSQNIDFAIEDMIPEAYADFAAPIFAAFASPALTTRETDVAEAVFLAANDTS
DRLRYPAGPDAVALAA

Sequences:

>Translated_256_residues
MHATFLLSTQEIIMNTVLITGTSSGYGLETARYFHAQGWQAIATMRTPRDGLLPEGLRILPLDVTDPASIAATIEAAGPI
DVLVNNAGIGLVGAFEAAPMDYVRKLFDTNTFGTMAMVQAVIPQMRARRSGVIVNVTSSVTLAPMPLAAAYTASKQAIEG
FTGSLAHELAAFGVRAKLVEPGYAPTTRFSQNIDFAIEDMIPEAYADFAAPIFAAFASPALTTRETDVAEAVFLAANDTS
DRLRYPAGPDAVALAA
>Mature_256_residues
MHATFLLSTQEIIMNTVLITGTSSGYGLETARYFHAQGWQAIATMRTPRDGLLPEGLRILPLDVTDPASIAATIEAAGPI
DVLVNNAGIGLVGAFEAAPMDYVRKLFDTNTFGTMAMVQAVIPQMRARRSGVIVNVTSSVTLAPMPLAAAYTASKQAIEG
FTGSLAHELAAFGVRAKLVEPGYAPTTRFSQNIDFAIEDMIPEAYADFAAPIFAAFASPALTTRETDVAEAVFLAANDTS
DRLRYPAGPDAVALAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=181, Percent_Identity=41.9889502762431, Blast_Score=118, Evalue=4e-27,
Organism=Homo sapiens, GI223718074, Length=187, Percent_Identity=40.1069518716578, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=31.9371727748691, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI7706318, Length=183, Percent_Identity=33.879781420765, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI150247226, Length=268, Percent_Identity=29.1044776119403, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI40548397, Length=193, Percent_Identity=31.0880829015544, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI214010158, Length=193, Percent_Identity=31.0880829015544, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI214010156, Length=193, Percent_Identity=31.0880829015544, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI22758144, Length=193, Percent_Identity=31.0880829015544, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI119392083, Length=181, Percent_Identity=32.5966850828729, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI157739938, Length=198, Percent_Identity=27.7777777777778, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI44680136, Length=221, Percent_Identity=27.1493212669683, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI44680133, Length=221, Percent_Identity=27.1493212669683, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI17738292, Length=221, Percent_Identity=27.1493212669683, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI19743808, Length=258, Percent_Identity=28.6821705426357, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI22507405, Length=263, Percent_Identity=28.1368821292776, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI50726952, Length=271, Percent_Identity=28.0442804428044, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7705925, Length=170, Percent_Identity=30, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4504503, Length=228, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=30, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI87082100, Length=185, Percent_Identity=40, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786701, Length=205, Percent_Identity=31.7073170731707, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787820, Length=194, Percent_Identity=34.020618556701, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787335, Length=179, Percent_Identity=32.9608938547486, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=179, Percent_Identity=32.4022346368715, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=176, Percent_Identity=30.6818181818182, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367365, Length=174, Percent_Identity=31.6091954022989, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=30.3846153846154, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=261, Percent_Identity=26.4367816091954, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=29.5, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=192, Percent_Identity=32.8125, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=32.0610687022901, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=28.4615384615385, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=32.4742268041237, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=201, Percent_Identity=29.8507462686567, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=197, Percent_Identity=28.4263959390863, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=29.8387096774194, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.0380228136882, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=246, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=190, Percent_Identity=28.4210526315789, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=191, Percent_Identity=30.3664921465969, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=32.1428571428571, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=31.9148936170213, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=31.9371727748691, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28571526, Length=240, Percent_Identity=31.6666666666667, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=30.7291666666667, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24644339, Length=206, Percent_Identity=30.0970873786408, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21357041, Length=174, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=27.4193548387097, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=27.4193548387097, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24584752, Length=182, Percent_Identity=28.021978021978, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007236, Length=193, Percent_Identity=30.5699481865285, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24584744, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574402, Length=184, Percent_Identity=28.804347826087, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355631, Length=177, Percent_Identity=29.9435028248588, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24643142, Length=172, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27044; Mature: 27044

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHATFLLSTQEIIMNTVLITGTSSGYGLETARYFHAQGWQAIATMRTPRDGLLPEGLRIL
CCEEEEEEHHHHHHEEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE
PLDVTDPASIAATIEAAGPIDVLVNNAGIGLVGAFEAAPMDYVRKLFDTNTFGTMAMVQA
EECCCCCCHHEEEEECCCCEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHH
VIPQMRARRSGVIVNVTSSVTLAPMPLAAAYTASKQAIEGFTGSLAHELAAFGVRAKLVE
HHHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEC
PGYAPTTRFSQNIDFAIEDMIPEAYADFAAPIFAAFASPALTTRETDVAEAVFLAANDTS
CCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCC
DRLRYPAGPDAVALAA
CCEECCCCCCCEEECC
>Mature Secondary Structure
MHATFLLSTQEIIMNTVLITGTSSGYGLETARYFHAQGWQAIATMRTPRDGLLPEGLRIL
CCEEEEEEHHHHHHEEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE
PLDVTDPASIAATIEAAGPIDVLVNNAGIGLVGAFEAAPMDYVRKLFDTNTFGTMAMVQA
EECCCCCCHHEEEEECCCCEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHH
VIPQMRARRSGVIVNVTSSVTLAPMPLAAAYTASKQAIEGFTGSLAHELAAFGVRAKLVE
HHHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEC
PGYAPTTRFSQNIDFAIEDMIPEAYADFAAPIFAAFASPALTTRETDVAEAVFLAANDTS
CCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCC
DRLRYPAGPDAVALAA
CCEECCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]