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The map label for this gene is hoxK [H]

Identifier: 119385819

GI number: 119385819

Start: 283197

End: 284282

Strand: Direct

Name: hoxK [H]

Synonym: Pden_3097

Alternate gene names: 119385819

Gene position: 283197-284282 (Clockwise)

Preceding gene: 119385818

Following gene: 119385820

Centisome position: 16.37

GC content: 61.69

Gene sequence:

>1086_bases
TTGTCGCAAATCGAGACTTTCTACGATGTTATGCGCCGGCAGGGGATCACCCGCCGCAGTTTCATGAAATACTGCTCGCT
GACAGCAGCGGCGCTTGGCCTTGGCCCGGCTTTCGTGCCCAAAATCGCCCATGCGATGGAAACCAAGCCCCGCACGCCGG
TGATCTGGGTGCATGGTCTGGAATGCACCTGCTGCTCGGAAAGCTTCATCCGCTCGGCCCATCCGCTGGCCAAGGATGTC
GTGCTGTCGATGATCAGCCTTGACTATGACGATACGCTGATGGCCGCTGCCGGCCATGCCGCCGAGGCGGCCTTCAAGGA
CACCATCCAGAAATACAAGGGCCAGTATATCCTTGCCGTCGAGGGAAACCCGCCGTTGAACGAAGACGGGATGTATTGCA
TCACCGGCGGCAAGCCATTTGTCGAAAAGCTGCGCCATGCGGCCAGGGACGCCAAGGCGATCATTTCATGGGGGGCTTGC
GCGTCCTATGGCTGCGTCCAGGCGGCCGCGCCGAACCCGACGCGGGCGACGCCGGTCCACAAGGTCATCCTCGACAAGCC
GATCATCAAGGTGCCGGGCTGCCCGCCCATCGCCGAGGTGATGACCGGCGTCATCACCTATATGCTGACCTTCGACCGCA
TGCCCGAGCTTGATCGTCAGGGCCGGCCGAAGATGTTCTACAGCCAGCGCATCCACGACAAATGCTATCGCCGCCCGCAT
TTCGACGCCGGCCAGTTTGTCGAGCATTGGGACGACGAAAACGCCAAGAAGGGCTATTGCCTTTACAAGATGGGCTGCAA
GGGCCCGACCACCTATAACGCCTGCTCGACCGTGCGCTGGAACGAGGGCGTTTCGTTTCCGATCCAGTCGGGCCATGGCT
GCATCGGCTGTTCCGAAGACGGGTTCTGGGATCAGGGTTCGTTCTATGACCGGCTGACCAATATCAAGGCCTTCGGGGTC
GAGGCCAATGCCGACAAGCTGGGCGGCATCGCGGCGGGTGCAGTCGGTGGGGCCGTCGCGGTCCATGCCGCGATTTCGGC
GCTGAAACGGGCGCAGAAGAAGACCCAGGACAAGGTGGAGGCCTAG

Upstream 100 bases:

>100_bases
CATTCTGTCATTGCCCTGGGCCCTCCTGCCTTGGCATGCCTTGAAAGACCACGCGAAGGTCCGCGCAGCCGGGCCGCCAG
GCTGAGAGGAGGAGGACGTC

Downstream 100 bases:

>100_bases
GCCATGACGATCAACACGCCGAATGGCTATACCCTCGACAATTCCGGGCGCCGCATCGTGGTGGACCCGGTCACCCGGAT
CGAAGGGCATATGCGCTGCG

Product: hydrogenase (NiFe) small subunit HydA

Products: NA

Alternate protein names: Hydrogenlyase; Membrane-bound hydrogenase small subunit [H]

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPAFVPKIAHAMETKPRTPVIWVHGLECTCCSESFIRSAHPLAKDV
VLSMISLDYDDTLMAAAGHAAEAAFKDTIQKYKGQYILAVEGNPPLNEDGMYCITGGKPFVEKLRHAARDAKAIISWGAC
ASYGCVQAAAPNPTRATPVHKVILDKPIIKVPGCPPIAEVMTGVITYMLTFDRMPELDRQGRPKMFYSQRIHDKCYRRPH
FDAGQFVEHWDDENAKKGYCLYKMGCKGPTTYNACSTVRWNEGVSFPIQSGHGCIGCSEDGFWDQGSFYDRLTNIKAFGV
EANADKLGGIAAGAVGGAVAVHAAISALKRAQKKTQDKVEA

Sequences:

>Translated_361_residues
MSQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPAFVPKIAHAMETKPRTPVIWVHGLECTCCSESFIRSAHPLAKDV
VLSMISLDYDDTLMAAAGHAAEAAFKDTIQKYKGQYILAVEGNPPLNEDGMYCITGGKPFVEKLRHAARDAKAIISWGAC
ASYGCVQAAAPNPTRATPVHKVILDKPIIKVPGCPPIAEVMTGVITYMLTFDRMPELDRQGRPKMFYSQRIHDKCYRRPH
FDAGQFVEHWDDENAKKGYCLYKMGCKGPTTYNACSTVRWNEGVSFPIQSGHGCIGCSEDGFWDQGSFYDRLTNIKAFGV
EANADKLGGIAAGAVGGAVAVHAAISALKRAQKKTQDKVEA
>Mature_360_residues
SQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPAFVPKIAHAMETKPRTPVIWVHGLECTCCSESFIRSAHPLAKDVV
LSMISLDYDDTLMAAAGHAAEAAFKDTIQKYKGQYILAVEGNPPLNEDGMYCITGGKPFVEKLRHAARDAKAIISWGACA
SYGCVQAAAPNPTRATPVHKVILDKPIIKVPGCPPIAEVMTGVITYMLTFDRMPELDRQGRPKMFYSQRIHDKCYRRPHF
DAGQFVEHWDDENAKKGYCLYKMGCKGPTTYNACSTVRWNEGVSFPIQSGHGCIGCSEDGFWDQGSFYDRLTNIKAFGVE
ANADKLGGIAAGAVGGAVAVHAAISALKRAQKKTQDKVEA

Specific function: This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions [H]

COG id: COG1740

COG function: function code C; Ni,Fe-hydrogenase I small subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

Organism=Escherichia coli, GI1787206, Length=360, Percent_Identity=68.8888888888889, Blast_Score=525, Evalue=1e-150,
Organism=Escherichia coli, GI1789371, Length=359, Percent_Identity=39.2757660167131, Blast_Score=270, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137
- InterPro:   IPR001821
- InterPro:   IPR006311 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.99.6 [H]

Molecular weight: Translated: 39531; Mature: 39400

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPAFVPKIAHAMETKPRTPVIWVHGL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECC
ECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHAAEAAFKDTIQKYKGQYILAV
CEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEEEE
EGNPPLNEDGMYCITGGKPFVEKLRHAARDAKAIISWGACASYGCVQAAAPNPTRATPVH
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCCCCCCCCHHH
KVILDKPIIKVPGCPPIAEVMTGVITYMLTFDRMPELDRQGRPKMFYSQRIHDKCYRRPH
HHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
FDAGQFVEHWDDENAKKGYCLYKMGCKGPTTYNACSTVRWNEGVSFPIQSGHGCIGCSED
CCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCC
GFWDQGSFYDRLTNIKAFGVEANADKLGGIAAGAVGGAVAVHAAISALKRAQKKTQDKVE
CCCCCCHHHHHHHCCEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
A
C
>Mature Secondary Structure 
SQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPAFVPKIAHAMETKPRTPVIWVHGL
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECC
ECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHAAEAAFKDTIQKYKGQYILAV
CEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEEEE
EGNPPLNEDGMYCITGGKPFVEKLRHAARDAKAIISWGACASYGCVQAAAPNPTRATPVH
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCCCCCCCCHHH
KVILDKPIIKVPGCPPIAEVMTGVITYMLTFDRMPELDRQGRPKMFYSQRIHDKCYRRPH
HHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
FDAGQFVEHWDDENAKKGYCLYKMGCKGPTTYNACSTVRWNEGVSFPIQSGHGCIGCSED
CCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCC
GFWDQGSFYDRLTNIKAFGVEANADKLGGIAAGAVGGAVAVHAAISALKRAQKKTQDKVE
CCCCCCHHHHHHHCCEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1383192; 12948488; 2493816 [H]