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The map label for this gene is yvrB [H]

Identifier: 119385705

GI number: 119385705

Start: 156564

End: 157625

Strand: Direct

Name: yvrB [H]

Synonym: Pden_2981

Alternate gene names: 119385705

Gene position: 156564-157625 (Clockwise)

Preceding gene: 119385704

Following gene: 119385706

Centisome position: 9.05

GC content: 69.11

Gene sequence:

>1062_bases
ATGACCGCTTCCGCGACAGTCCCTGTCCGGCGACGCTCCCTGGGCCTGTCGCGGCTGATCCTTGGGCTGGCGGCGCTGAT
CGCGGCGCTGGCCTTCGGGGTTTCCGTGGGCGAGACCGTCATTGCGCCCGAGGTCATCTGGAAGACGTTGTCGAACCAGC
TCTTCGGCACCGACTATCCCCTGCGCCCCATCCAGGAAGGCATCGTCTGGAACTATAGGCTGACGCGGGCCATCGTCGCG
GCGGCATGCGGGGCGGGGCTGGCGGTCTCGGGCGTGGTCTTGCAGGCGCTTTTGCGCAATGCGCTGGCCGATCCCTATAT
CCTGGGGATTTCGGCCGGGGCCTCGACCGGGGCGGTGCTGGTCATGGTGCTGGGCATCGGAGCAGGCGCGCTGTCGCTGT
CGGTCGGCGCCTTCGCGGGCGGCATCCTGGCCTTCACGCTGGTCATCGGGTTGGCGCGCGCTGCGGGCAGCGGCATCGGC
CTGCCGCAAGCGGGGCTGATCATCCTGTCGGGCATCGCGGGGACGCAGCTTTTCAATGCGCTGACCTCTTTCGTGATCGC
GCAATCGGCCAATGCCGAGCAGGTGCGTGGCGTCACATTCTGGATGATGGGCAACATGAGCGGGGTGCGCTGGCCCGACG
TGCGGCTGGCGGTGCCGGTCTCTGCCTTGGGGGTGCTGGTCTGCATGGCGCATGCGCGGGCATTGGACGCCTTCACCTTC
GGGGCGGAATCGGCCGTCACCATGGGCGTCGCGGTGCGCCGCACGCAGGCGGTGCTGATCGGGGTGGTGACGATGATCAC
CGCCACCATGGTCAGCATCACCGGCGCCATCGGCTTCGTCGGCTTGGTGATCCCCCATGCCGCGCGCTTCCTGGTGGGCG
TCAGGCACGACCGGCTGTTGCCGGCCTCGGCGCTGATCGGCGCGGTGTTCCTGGTCATGGCCGATGTCGTCTCGCGCGTG
ATCGTGCCGGGGCAGGTGCTGCCCATCGGGGTGATCACCGCGCTGGTCGGGGCGCCGGGCTTCGCCGTCATCCTGATCCG
GGGACGGAGGCAGCGCGCATGA

Upstream 100 bases:

>100_bases
GCATCATCATCGTCGATGCCCACCAGATCCATGCCGGGATCCGCATCCCCTCGGGGATCGAGACGGTGGTCGCGGGCATC
GAGGCCGGCGGCGCGCAGGA

Downstream 100 bases:

>100_bases
TCCGGCTGGAGGAGGCAAGCTGGCGCGCGGGCCAGACCGCCATCGTCCGGGACATCGCCCTGCATGTGCGCAGGGGCGAG
ACCTTCGGCCTTGTCGGTCC

Product: transport system permease protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTASATVPVRRRSLGLSRLILGLAALIAALAFGVSVGETVIAPEVIWKTLSNQLFGTDYPLRPIQEGIVWNYRLTRAIVA
AACGAGLAVSGVVLQALLRNALADPYILGISAGASTGAVLVMVLGIGAGALSLSVGAFAGGILAFTLVIGLARAAGSGIG
LPQAGLIILSGIAGTQLFNALTSFVIAQSANAEQVRGVTFWMMGNMSGVRWPDVRLAVPVSALGVLVCMAHARALDAFTF
GAESAVTMGVAVRRTQAVLIGVVTMITATMVSITGAIGFVGLVIPHAARFLVGVRHDRLLPASALIGAVFLVMADVVSRV
IVPGQVLPIGVITALVGAPGFAVILIRGRRQRA

Sequences:

>Translated_353_residues
MTASATVPVRRRSLGLSRLILGLAALIAALAFGVSVGETVIAPEVIWKTLSNQLFGTDYPLRPIQEGIVWNYRLTRAIVA
AACGAGLAVSGVVLQALLRNALADPYILGISAGASTGAVLVMVLGIGAGALSLSVGAFAGGILAFTLVIGLARAAGSGIG
LPQAGLIILSGIAGTQLFNALTSFVIAQSANAEQVRGVTFWMMGNMSGVRWPDVRLAVPVSALGVLVCMAHARALDAFTF
GAESAVTMGVAVRRTQAVLIGVVTMITATMVSITGAIGFVGLVIPHAARFLVGVRHDRLLPASALIGAVFLVMADVVSRV
IVPGQVLPIGVITALVGAPGFAVILIRGRRQRA
>Mature_352_residues
TASATVPVRRRSLGLSRLILGLAALIAALAFGVSVGETVIAPEVIWKTLSNQLFGTDYPLRPIQEGIVWNYRLTRAIVAA
ACGAGLAVSGVVLQALLRNALADPYILGISAGASTGAVLVMVLGIGAGALSLSVGAFAGGILAFTLVIGLARAAGSGIGL
PQAGLIILSGIAGTQLFNALTSFVIAQSANAEQVRGVTFWMMGNMSGVRWPDVRLAVPVSALGVLVCMAHARALDAFTFG
AESAVTMGVAVRRTQAVLIGVVTMITATMVSITGAIGFVGLVIPHAARFLVGVRHDRLLPASALIGAVFLVMADVVSRVI
VPGQVLPIGVITALVGAPGFAVILIRGRRQRA

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=293, Percent_Identity=35.8361774744027, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1788004, Length=289, Percent_Identity=34.6020761245675, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790741, Length=289, Percent_Identity=35.2941176470588, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786805, Length=293, Percent_Identity=34.1296928327645, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1786804, Length=285, Percent_Identity=29.1228070175439, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786347, Length=284, Percent_Identity=30.9859154929577, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 36015; Mature: 35883

Theoretical pI: Translated: 12.06; Mature: 12.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASATVPVRRRSLGLSRLILGLAALIAALAFGVSVGETVIAPEVIWKTLSNQLFGTDYP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
LRPIQEGIVWNYRLTRAIVAAACGAGLAVSGVVLQALLRNALADPYILGISAGASTGAVL
CCHHHHCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
VMVLGIGAGALSLSVGAFAGGILAFTLVIGLARAAGSGIGLPQAGLIILSGIAGTQLFNA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEECCHHHHHHHH
LTSFVIAQSANAEQVRGVTFWMMGNMSGVRWPDVRLAVPVSALGVLVCMAHARALDAFTF
HHHHHHHCCCCHHHHCCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHC
GAESAVTMGVAVRRTQAVLIGVVTMITATMVSITGAIGFVGLVIPHAARFLVGVRHDRLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PASALIGAVFLVMADVVSRVIVPGQVLPIGVITALVGAPGFAVILIRGRRQRA
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
TASATVPVRRRSLGLSRLILGLAALIAALAFGVSVGETVIAPEVIWKTLSNQLFGTDYP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
LRPIQEGIVWNYRLTRAIVAAACGAGLAVSGVVLQALLRNALADPYILGISAGASTGAVL
CCHHHHCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
VMVLGIGAGALSLSVGAFAGGILAFTLVIGLARAAGSGIGLPQAGLIILSGIAGTQLFNA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEECCHHHHHHHH
LTSFVIAQSANAEQVRGVTFWMMGNMSGVRWPDVRLAVPVSALGVLVCMAHARALDAFTF
HHHHHHHCCCCHHHHCCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHC
GAESAVTMGVAVRRTQAVLIGVVTMITATMVSITGAIGFVGLVIPHAARFLVGVRHDRLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PASALIGAVFLVMADVVSRVIVPGQVLPIGVITALVGAPGFAVILIRGRRQRA
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]