| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119358206
Identifier: 119358206
GI number: 119358206
Start: 2813292
End: 2814779
Strand: Reverse
Name: 119358206
Synonym: Cpha266_2438
Alternate gene names: NA
Gene position: 2814779-2813292 (Counterclockwise)
Preceding gene: 119358207
Following gene: 119358205
Centisome position: 89.82
GC content: 53.09
Gene sequence:
>1488_bases ATGAGCAGGAATACGCTTATAGCCGGTCAGGCGGGTATATCGTTTGCCGGTTTTCTGTTCGGGCAGATCGTCCGGTTTTT TTTTACTATGGCTGTTGCCCGACTTCTCGGCGAGGAGGCCCTTGGCGTGTATGCGCTCGCTTTCGGGGTTATGCAGATTA TCGAGGTGTTTGCCGTGGCTGGGTTCGATTCTGCCGTCTTGCGTTTTGTGAATCTATACCCGAAAGAGGGGTTCCGGGGG AGGGATACTGTCGGGTTTGCCCTCAGAAGCTCCGTTTTTGTTGCTGCGATGTCGGCACTTTTCGTGATTCTTTTTTCTTC ACAGCTTTCCGGATTGCTCAAAGGTGGAAATCTTCTCAGGTTTACACTGATCTCCTATGCCGCGGCAGTGCCGTTCAATG TTGCTGCCACCATAGCTGCTCATGCGTTGCAGGGCTATCGGCAACTGCTTCCTAAAGTTGTTGCCGCCCAGGTGATCACT CCGATCGTGATGCTGCTTCTGACGTTCGCGCTCAGCTATTTTGCAGGGCGAAGCCCGGCACTTCTGATTCCCTATACGGC AGCATCGATCATTTCGTTTTTCTGGATATGGCGCAAACTTGTCCATGTAACCGGTACCGGTTACATGGATATGGTCAAGG CACCGTCCGACCGGCAGATGACCGCTTATGCTCTTCCGCTTATGGGCGTCTCTCTTTTGAGTATGATGGCTCACTGGCTC GACATTCTGCTGCTCGGGATGCTTGCAGGTCCAATTGCATCCGGTCTGTATCAGCCGGCGGCGCGTACGGCGGGAATTCT TCGTGCCGTGCTTCCTGCGTTTGCCGGAATTGTCGCGCCGCTTGTGGCCGGCATCCATGCAGGCAACCGGAGTGCCGAAA CGGAGAGTCTCTACCACATGACCACTCGCTGGACGGTACTGCTCGTCACTCCTGCTGCTATTTTTCTCATGCTGCTTCCT GAACCTGTTCTTGCTCTTTTCGGGGCGCGTTTCGCTTCAGAAGGGAGCGTGCTGACCATTCTCGCAGCCACTGCGCTTGT TCAGGCTCTGACGGGAATTTCAGGAACTGTTTTTGCCATGACGGGACACTCAAGAATCATTTTATTGAATGCTATTGCCG GACTCTGCATACAGGCTGCAGCCACGCTTTTGCTGATACCCCGTTACGGGATAACTGGCGCTGCTCTGGCTGCGTTGCTA TCCATGGTGCTGCTTTCGCTGTTTCGATATATCGAAGTGAAGAGCGTGCTGAAGTTTCAACCGCTCTCCGCCGTGTTATG GAAACCTGCGCTTGCCGGAGGATTGACGGCTCTGCTTTTGTTTCTGCTCAGACCATGGTTGCTCGGGTTTCATGAAGCTT TTGCTGTCGGTATCGGCATTGCGGTTACTTCCGGATGTTACCTGATGCTGATCATCGTGATGGGGTTGGAAGAGGAGGAT CGGGAGATTATCTTGAAAATCATGCCGTTTGGCATGAATAAACCGTAA
Upstream 100 bases:
>100_bases GCAAAGCCGAACGGAAGGCATTCGCCAGACAGCATGACTGGAACCGGCTTGCAGCCGAAATGGAACGGGAACTGCTGAAA AGTTCCGGGCGGGGGTGCCT
Downstream 100 bases:
>100_bases GACATATTGGGCGAGTGAAAAACAGAATTATGCCATATGCTGCCGCTGCAGCAGGATATGCGGCGCTTGCCGCAGCGCTT TTCTATCAGTTGCTTTTTCT
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Polysaccharide Efflux Transporter; Heteropolysaccharide Repeat-Containing Protein; Polysaccharide Biosynthesis Related Protein; Capsular Polysaccharide Biosynthesis Protein; Polysaccharide Biosynthesis-Like Protein; MatE Family; Polysaccharide Biosynthesis Transporter
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MSRNTLIAGQAGISFAGFLFGQIVRFFFTMAVARLLGEEALGVYALAFGVMQIIEVFAVAGFDSAVLRFVNLYPKEGFRG RDTVGFALRSSVFVAAMSALFVILFSSQLSGLLKGGNLLRFTLISYAAAVPFNVAATIAAHALQGYRQLLPKVVAAQVIT PIVMLLLTFALSYFAGRSPALLIPYTAASIISFFWIWRKLVHVTGTGYMDMVKAPSDRQMTAYALPLMGVSLLSMMAHWL DILLLGMLAGPIASGLYQPAARTAGILRAVLPAFAGIVAPLVAGIHAGNRSAETESLYHMTTRWTVLLVTPAAIFLMLLP EPVLALFGARFASEGSVLTILAATALVQALTGISGTVFAMTGHSRIILLNAIAGLCIQAAATLLLIPRYGITGAALAALL SMVLLSLFRYIEVKSVLKFQPLSAVLWKPALAGGLTALLLFLLRPWLLGFHEAFAVGIGIAVTSGCYLMLIIVMGLEEED REIILKIMPFGMNKP
Sequences:
>Translated_495_residues MSRNTLIAGQAGISFAGFLFGQIVRFFFTMAVARLLGEEALGVYALAFGVMQIIEVFAVAGFDSAVLRFVNLYPKEGFRG RDTVGFALRSSVFVAAMSALFVILFSSQLSGLLKGGNLLRFTLISYAAAVPFNVAATIAAHALQGYRQLLPKVVAAQVIT PIVMLLLTFALSYFAGRSPALLIPYTAASIISFFWIWRKLVHVTGTGYMDMVKAPSDRQMTAYALPLMGVSLLSMMAHWL DILLLGMLAGPIASGLYQPAARTAGILRAVLPAFAGIVAPLVAGIHAGNRSAETESLYHMTTRWTVLLVTPAAIFLMLLP EPVLALFGARFASEGSVLTILAATALVQALTGISGTVFAMTGHSRIILLNAIAGLCIQAAATLLLIPRYGITGAALAALL SMVLLSLFRYIEVKSVLKFQPLSAVLWKPALAGGLTALLLFLLRPWLLGFHEAFAVGIGIAVTSGCYLMLIIVMGLEEED REIILKIMPFGMNKP >Mature_494_residues SRNTLIAGQAGISFAGFLFGQIVRFFFTMAVARLLGEEALGVYALAFGVMQIIEVFAVAGFDSAVLRFVNLYPKEGFRGR DTVGFALRSSVFVAAMSALFVILFSSQLSGLLKGGNLLRFTLISYAAAVPFNVAATIAAHALQGYRQLLPKVVAAQVITP IVMLLLTFALSYFAGRSPALLIPYTAASIISFFWIWRKLVHVTGTGYMDMVKAPSDRQMTAYALPLMGVSLLSMMAHWLD ILLLGMLAGPIASGLYQPAARTAGILRAVLPAFAGIVAPLVAGIHAGNRSAETESLYHMTTRWTVLLVTPAAIFLMLLPE PVLALFGARFASEGSVLTILAATALVQALTGISGTVFAMTGHSRIILLNAIAGLCIQAAATLLLIPRYGITGAALAALLS MVLLSLFRYIEVKSVLKFQPLSAVLWKPALAGGLTALLLFLLRPWLLGFHEAFAVGIGIAVTSGCYLMLIIVMGLEEEDR EIILKIMPFGMNKP
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52910; Mature: 52779
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNTLIAGQAGISFAGFLFGQIVRFFFTMAVARLLGEEALGVYALAFGVMQIIEVFAVA CCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GFDSAVLRFVNLYPKEGFRGRDTVGFALRSSVFVAAMSALFVILFSSQLSGLLKGGNLLR CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH FTLISYAAAVPFNVAATIAAHALQGYRQLLPKVVAAQVITPIVMLLLTFALSYFAGRSPA HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LLIPYTAASIISFFWIWRKLVHVTGTGYMDMVKAPSDRQMTAYALPLMGVSLLSMMAHWL EEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH DILLLGMLAGPIASGLYQPAARTAGILRAVLPAFAGIVAPLVAGIHAGNRSAETESLYHM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH TTRWTVLLVTPAAIFLMLLPEPVLALFGARFASEGSVLTILAATALVQALTGISGTVFAM HHHHEEEEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEE TGHSRIILLNAIAGLCIQAAATLLLIPRYGITGAALAALLSMVLLSLFRYIEVKSVLKFQ ECCCCEEHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PLSAVLWKPALAGGLTALLLFLLRPWLLGFHEAFAVGIGIAVTSGCYLMLIIVMGLEEED CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC REIILKIMPFGMNKP HHHHHHEECCCCCCC >Mature Secondary Structure SRNTLIAGQAGISFAGFLFGQIVRFFFTMAVARLLGEEALGVYALAFGVMQIIEVFAVA CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GFDSAVLRFVNLYPKEGFRGRDTVGFALRSSVFVAAMSALFVILFSSQLSGLLKGGNLLR CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH FTLISYAAAVPFNVAATIAAHALQGYRQLLPKVVAAQVITPIVMLLLTFALSYFAGRSPA HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LLIPYTAASIISFFWIWRKLVHVTGTGYMDMVKAPSDRQMTAYALPLMGVSLLSMMAHWL EEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH DILLLGMLAGPIASGLYQPAARTAGILRAVLPAFAGIVAPLVAGIHAGNRSAETESLYHM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH TTRWTVLLVTPAAIFLMLLPEPVLALFGARFASEGSVLTILAATALVQALTGISGTVFAM HHHHEEEEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEE TGHSRIILLNAIAGLCIQAAATLLLIPRYGITGAALAALLSMVLLSLFRYIEVKSVLKFQ ECCCCEEHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PLSAVLWKPALAGGLTALLLFLLRPWLLGFHEAFAVGIGIAVTSGCYLMLIIVMGLEEED CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC REIILKIMPFGMNKP HHHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA