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The map label for this gene is comF [H]

Identifier: 119358139

GI number: 119358139

Start: 2755724

End: 2756419

Strand: Reverse

Name: comF [H]

Synonym: Cpha266_2371

Alternate gene names: 119358139

Gene position: 2756419-2755724 (Counterclockwise)

Preceding gene: 119358140

Following gene: 119358138

Centisome position: 87.95

GC content: 49.14

Gene sequence:

>696_bases
ATGGACGATCGACTGCTTCATTTTGTTTACCCCAATGTCTGTGTGGTATGCCAGAACCTGCTTCTGGCATCAGAGCGTTA
TTTGTGCAGTTCGTGTTTGAACGGGTTTGAGCCTTTTTCGGAAGGCGCAGCACCTGAACGTGTTTTTCTTCGCTCAATTG
AAAGCCATTTCGGTGAAGACTCGCTTTTTGAACGAGCATGGTGCCGATATGTTTTTCATAAAAACAGTGCATTGCAGCAA
GCTGTTCATGCCATGAAATACCAGGGAATGTTCAATCTCGGCATATTTTTCGGCAAAGAAATCGGGCGCTATATTGCGGC
ATCGGGTATGGATTGTGATGCGATCGACTGTATTGTTCCAGTGCCTTTGAACAGATTGAAGTTGATTGAACGCTCATTCA
ACCAGGCTGAAAAAATTGCCGAAGGAATGGCAGCCGTATTGCACAAACCGGTAGAACCCCGAATGCTAAGGCGGGTTACC
TATACCAGTTCGCAAACAGGCCTTACGCTTGCTCAGAGAAAAAAAAATCTTGCAGGCGCTTTCGAGCCGGGCAAGGGGCG
GATCCCACGCCGGGTGATTCTTGTCGACGATATTGTCACCACCGGCGCGACAATGGTTGCAGCCGCACAGGCCTTGCAAA
AGGGCGGCGCAGAAACCATCCATCTTGCAGCACTTGCGCTTGCAGCAAAAGAGTAG

Upstream 100 bases:

>100_bases
CGAAGGTCTCGATATTGTTCCTGCAGAGCTCGGAAACAGGGCAGGGATGTACGGCGCTGCAGCGTTATGCTTTGTGTAAC
TGACAACCCGGGATGGTTGT

Downstream 100 bases:

>100_bases
TCAGTTGACAATGGAACTTTTTTACACAACGCCAAAGAACCTTGAGGGAAGCCGGACAGAGATTGCTCTGGAGGGGGATG
AATTTCATCACCTTGTCAGG

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MDDRLLHFVYPNVCVVCQNLLLASERYLCSSCLNGFEPFSEGAAPERVFLRSIESHFGEDSLFERAWCRYVFHKNSALQQ
AVHAMKYQGMFNLGIFFGKEIGRYIAASGMDCDAIDCIVPVPLNRLKLIERSFNQAEKIAEGMAAVLHKPVEPRMLRRVT
YTSSQTGLTLAQRKKNLAGAFEPGKGRIPRRVILVDDIVTTGATMVAAAQALQKGGAETIHLAALALAAKE

Sequences:

>Translated_231_residues
MDDRLLHFVYPNVCVVCQNLLLASERYLCSSCLNGFEPFSEGAAPERVFLRSIESHFGEDSLFERAWCRYVFHKNSALQQ
AVHAMKYQGMFNLGIFFGKEIGRYIAASGMDCDAIDCIVPVPLNRLKLIERSFNQAEKIAEGMAAVLHKPVEPRMLRRVT
YTSSQTGLTLAQRKKNLAGAFEPGKGRIPRRVILVDDIVTTGATMVAAAQALQKGGAETIHLAALALAAKE
>Mature_231_residues
MDDRLLHFVYPNVCVVCQNLLLASERYLCSSCLNGFEPFSEGAAPERVFLRSIESHFGEDSLFERAWCRYVFHKNSALQQ
AVHAMKYQGMFNLGIFFGKEIGRYIAASGMDCDAIDCIVPVPLNRLKLIERSFNQAEKIAEGMAAVLHKPVEPRMLRRVT
YTSSQTGLTLAQRKKNLAGAFEPGKGRIPRRVILVDDIVTTGATMVAAAQALQKGGAETIHLAALALAAKE

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=113, Percent_Identity=34.5132743362832, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 25536; Mature: 25536

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDRLLHFVYPNVCVVCQNLLLASERYLCSSCLNGFEPFSEGAAPERVFLRSIESHFGED
CCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHCCCH
SLFERAWCRYVFHKNSALQQAVHAMKYQGMFNLGIFFGKEIGRYIAASGMDCDAIDCIVP
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEC
VPLNRLKLIERSFNQAEKIAEGMAAVLHKPVEPRMLRRVTYTSSQTGLTLAQRKKNLAGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCC
FEPGKGRIPRRVILVDDIVTTGATMVAAAQALQKGGAETIHLAALALAAKE
CCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MDDRLLHFVYPNVCVVCQNLLLASERYLCSSCLNGFEPFSEGAAPERVFLRSIESHFGED
CCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHCCCH
SLFERAWCRYVFHKNSALQQAVHAMKYQGMFNLGIFFGKEIGRYIAASGMDCDAIDCIVP
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEC
VPLNRLKLIERSFNQAEKIAEGMAAVLHKPVEPRMLRRVTYTSSQTGLTLAQRKKNLAGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCC
FEPGKGRIPRRVILVDDIVTTGATMVAAAQALQKGGAETIHLAALALAAKE
CCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]