| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is 119358026
Identifier: 119358026
GI number: 119358026
Start: 2579982
End: 2581664
Strand: Reverse
Name: 119358026
Synonym: Cpha266_2254
Alternate gene names: NA
Gene position: 2581664-2579982 (Counterclockwise)
Preceding gene: 119358027
Following gene: 119358025
Centisome position: 82.38
GC content: 27.99
Gene sequence:
>1683_bases ATGAGCAAAATGAAATTAAGAACAGAGACTGCATTATTCGGAGAGAATGAATTAACCCTAATAATTGACTACCTTTCTTC TTATATTGATAACACAGATAGGCAGTATATAACAAAATTAAAATTAGAAAAACTGCTTGTCCTATTTATCAAGATAGGTT TAGACAAAAAATATTTACGGTCTGTAAATTCTCTCTACACTTATGATTTTCAGTTAGCTAAATATAGTTCTCTGATTGGG ACAAAATACTACCTTTTTGGCAGCATTCCAAGTATAACTAAAATAGATTCAGTAAATGACAATCCAAATTTATCAAGCTT TTCTGAATCTTTATCTAAGTATCTAGAAGAAAAAAATATTCTACAAAAACATAGAAATGGATATCAATTAAACTCGGCCG TTAAATCAAAAACGAAATCATTGTTAGCGAGTAATTCTCAAATTCTTGGATTTATATTTTCAGAAATATTAGAAAAGAAA AAATTAATAAATGATAATGATTTAGTTGTTCTAACAAGCTGTGTAGGCTACGAAGAGAATATATCCTCCCTATATTCCGA GCTTTTAATCTTCAGGAAGCAGTTTGATGTCACTAACTTATTATTAGAAAAAAATTATAGAACTACAAAATATTTTACTG CTATAAATAGTGGTTGGTATAAGTTTATTAACTATATAAATGGAAGGGCAGAAAAGGTTATAACATATGTTTCCGACCAA CTTGACGGGTTACTAATACATATTTGGAATGAAATATGGGAAAACCTTTTTCACTCATTTGAACATATCGATATTTATCA AAAAAGACACCTTGTAAAATATGGATTAATTATTACGGAGCTAAATATATTAATAAGAGTGTTCTACCATGACAAAGAAG GATGCAGAATAGAAGAAGAAATAAAATCTTTATTGGATATACTTCCATTGCTTAAAGCAACTGAAGATATTGAGATCAAT TCTTTGGTAAAATCTTTTGAAAATGGTATAAGCGAAACAATTAGGAGTAAGGATAAAGATGTGATTATAGAGAAATTGTT AAAAATAAAAAACAATATACCAATAAACGGTATTGAATTGCCTGTTAGTAAGTTAAAATTAGACAAGTCTAATTATCTTA AAAGAAAACCTAAAAAACAGAAAGAAATAAATATTTTAATTGCGTCACCAAGTGATTTAGTGAAAGAAAGGGATGAAATT CTAAATAAACTAGAAAGAAAATATCGGAAAGATGGACATGAACAAAGGACAAAGAAAAGAATAATTGTTCATGGCTGGGA AGACGTTTCTTCGCAAGTTGGTAATCCTCAGAAAACCATAAACAGAAAGTTATTACATAAAAATATTGATATAGTAGTTG CGATATTTAAACACAGGCTTGGCACTCCAATTTATGATGAAACAAACAAATTACTGTTTGAATCAGGAACCGTTGAAGAG ATTTTATATACGCTAAATGATAATGCCCCATTAGGTATGTTGTACTTCTATCATGAAGCTCCGAAATTGAGTTTAGATAA TAATCAAATTGACAATATAATTCAAGAATGGAATAGATTAAAGAATTTTAAAAGTTCAATTGGTGATAAAATAATGTATA GAACTTTCAAAAATACATTTACTTTACTTGAGATATTGACAACTGATCTTAGTAACAATATCTATGATTATTTCGAAAAA TAG
Upstream 100 bases:
>100_bases ACCCCTCAAAGGGGTATAAAGCACACCAGAATAGCTGGCTATATGCACCTTTTGGCGGGATATGGTGCATAGATAAAGGA GTTGGTAGCAATAATAATAG
Downstream 100 bases:
>100_bases AATTACTGCCACCAACGCGATTTTTTCGTCAGGCTTGGTGACATGCAAACTTGGAGCTTTGTCCCTATGTGTTAATATAG ATTTTGCATCCTAAAAGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 560; Mature: 559
Protein sequence:
>560_residues MSKMKLRTETALFGENELTLIIDYLSSYIDNTDRQYITKLKLEKLLVLFIKIGLDKKYLRSVNSLYTYDFQLAKYSSLIG TKYYLFGSIPSITKIDSVNDNPNLSSFSESLSKYLEEKNILQKHRNGYQLNSAVKSKTKSLLASNSQILGFIFSEILEKK KLINDNDLVVLTSCVGYEENISSLYSELLIFRKQFDVTNLLLEKNYRTTKYFTAINSGWYKFINYINGRAEKVITYVSDQ LDGLLIHIWNEIWENLFHSFEHIDIYQKRHLVKYGLIITELNILIRVFYHDKEGCRIEEEIKSLLDILPLLKATEDIEIN SLVKSFENGISETIRSKDKDVIIEKLLKIKNNIPINGIELPVSKLKLDKSNYLKRKPKKQKEINILIASPSDLVKERDEI LNKLERKYRKDGHEQRTKKRIIVHGWEDVSSQVGNPQKTINRKLLHKNIDIVVAIFKHRLGTPIYDETNKLLFESGTVEE ILYTLNDNAPLGMLYFYHEAPKLSLDNNQIDNIIQEWNRLKNFKSSIGDKIMYRTFKNTFTLLEILTTDLSNNIYDYFEK
Sequences:
>Translated_560_residues MSKMKLRTETALFGENELTLIIDYLSSYIDNTDRQYITKLKLEKLLVLFIKIGLDKKYLRSVNSLYTYDFQLAKYSSLIG TKYYLFGSIPSITKIDSVNDNPNLSSFSESLSKYLEEKNILQKHRNGYQLNSAVKSKTKSLLASNSQILGFIFSEILEKK KLINDNDLVVLTSCVGYEENISSLYSELLIFRKQFDVTNLLLEKNYRTTKYFTAINSGWYKFINYINGRAEKVITYVSDQ LDGLLIHIWNEIWENLFHSFEHIDIYQKRHLVKYGLIITELNILIRVFYHDKEGCRIEEEIKSLLDILPLLKATEDIEIN SLVKSFENGISETIRSKDKDVIIEKLLKIKNNIPINGIELPVSKLKLDKSNYLKRKPKKQKEINILIASPSDLVKERDEI LNKLERKYRKDGHEQRTKKRIIVHGWEDVSSQVGNPQKTINRKLLHKNIDIVVAIFKHRLGTPIYDETNKLLFESGTVEE ILYTLNDNAPLGMLYFYHEAPKLSLDNNQIDNIIQEWNRLKNFKSSIGDKIMYRTFKNTFTLLEILTTDLSNNIYDYFEK >Mature_559_residues SKMKLRTETALFGENELTLIIDYLSSYIDNTDRQYITKLKLEKLLVLFIKIGLDKKYLRSVNSLYTYDFQLAKYSSLIGT KYYLFGSIPSITKIDSVNDNPNLSSFSESLSKYLEEKNILQKHRNGYQLNSAVKSKTKSLLASNSQILGFIFSEILEKKK LINDNDLVVLTSCVGYEENISSLYSELLIFRKQFDVTNLLLEKNYRTTKYFTAINSGWYKFINYINGRAEKVITYVSDQL DGLLIHIWNEIWENLFHSFEHIDIYQKRHLVKYGLIITELNILIRVFYHDKEGCRIEEEIKSLLDILPLLKATEDIEINS LVKSFENGISETIRSKDKDVIIEKLLKIKNNIPINGIELPVSKLKLDKSNYLKRKPKKQKEINILIASPSDLVKERDEIL NKLERKYRKDGHEQRTKKRIIVHGWEDVSSQVGNPQKTINRKLLHKNIDIVVAIFKHRLGTPIYDETNKLLFESGTVEEI LYTLNDNAPLGMLYFYHEAPKLSLDNNQIDNIIQEWNRLKNFKSSIGDKIMYRTFKNTFTLLEILTTDLSNNIYDYFEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65494; Mature: 65363
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKMKLRTETALFGENELTLIIDYLSSYIDNTDRQYITKLKLEKLLVLFIKIGLDKKYLR CCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH SVNSLYTYDFQLAKYSSLIGTKYYLFGSIPSITKIDSVNDNPNLSSFSESLSKYLEEKNI HHHHHHHEEHHHHHHHHHHCCHHHEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHH LQKHRNGYQLNSAVKSKTKSLLASNSQILGFIFSEILEKKKLINDNDLVVLTSCVGYEEN HHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH ISSLYSELLIFRKQFDVTNLLLEKNYRTTKYFTAINSGWYKFINYINGRAEKVITYVSDQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LDGLLIHIWNEIWENLFHSFEHIDIYQKRHLVKYGLIITELNILIRVFYHDKEGCRIEEE HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHH IKSLLDILPLLKATEDIEINSLVKSFENGISETIRSKDKDVIIEKLLKIKNNIPINGIEL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEC PVSKLKLDKSNYLKRKPKKQKEINILIASPSDLVKERDEILNKLERKYRKDGHEQRTKKR CHHHHHCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC IIVHGWEDVSSQVGNPQKTINRKLLHKNIDIVVAIFKHRLGTPIYDETNKLLFESGTVEE EEEECHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHH ILYTLNDNAPLGMLYFYHEAPKLSLDNNQIDNIIQEWNRLKNFKSSIGDKIMYRTFKNTF HHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLLEILTTDLSNNIYDYFEK HHHHHHHHHHCCCHHHHHCC >Mature Secondary Structure SKMKLRTETALFGENELTLIIDYLSSYIDNTDRQYITKLKLEKLLVLFIKIGLDKKYLR CCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH SVNSLYTYDFQLAKYSSLIGTKYYLFGSIPSITKIDSVNDNPNLSSFSESLSKYLEEKNI HHHHHHHEEHHHHHHHHHHCCHHHEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHH LQKHRNGYQLNSAVKSKTKSLLASNSQILGFIFSEILEKKKLINDNDLVVLTSCVGYEEN HHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH ISSLYSELLIFRKQFDVTNLLLEKNYRTTKYFTAINSGWYKFINYINGRAEKVITYVSDQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LDGLLIHIWNEIWENLFHSFEHIDIYQKRHLVKYGLIITELNILIRVFYHDKEGCRIEEE HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHH IKSLLDILPLLKATEDIEINSLVKSFENGISETIRSKDKDVIIEKLLKIKNNIPINGIEL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEC PVSKLKLDKSNYLKRKPKKQKEINILIASPSDLVKERDEILNKLERKYRKDGHEQRTKKR CHHHHHCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC IIVHGWEDVSSQVGNPQKTINRKLLHKNIDIVVAIFKHRLGTPIYDETNKLLFESGTVEE EEEECHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHH ILYTLNDNAPLGMLYFYHEAPKLSLDNNQIDNIIQEWNRLKNFKSSIGDKIMYRTFKNTF HHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLLEILTTDLSNNIYDYFEK HHHHHHHHHHCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA