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The map label for this gene is ysgA [H]

Identifier: 119357948

GI number: 119357948

Start: 2504876

End: 2505682

Strand: Reverse

Name: ysgA [H]

Synonym: Cpha266_2163

Alternate gene names: 119357948

Gene position: 2505682-2504876 (Counterclockwise)

Preceding gene: 119357949

Following gene: 119357947

Centisome position: 79.95

GC content: 51.55

Gene sequence:

>807_bases
ATGACTTCGAGTGATCTTAATCCGTTAAGCAAGGTGAAGCTGCGCAGGTTTGTTAAGCTTCAGGAAAAAAAGTATCGGGA
CCAGGATGGGCTGTTTCTTGCTGAAGGTCTTCGTACCGTCAGGGAGCTCTGCCAGAACATTCCCGACGAGAGCATGCTTC
TTGCTCTCTTGCTTCGGGAAGGGGAGATCGGGCTTGGCGGATTTCCTGAGATTCCGGAAGATAAGCTGTATGTGATGAAC
AGTGAGCAATGTTCTCTGCTTAGCAGTACCGCTGCGCCACAGGGCGTTATCGGGGTTTTTCGTCAGCAGCAGGTGAGTCG
GTACCCATGCGGTTTTAAAGACGAAAAGAAAGGGCGCTCTTTGCTTATTGCTCTTGATGAGGTGCAGGATCCGGGTAATG
TCGGTACCATTCTTCGCACGGCAGCCTGGTTCGGCGCAGATGCTCTGATCTGTTCAACAGGCACTGCCGATCGGTATAAC
GCAAAAGTCGTTCGTTCCTCTGCCGGAAGTCTTTATGCCCTTCCTCATTATACCGTTGAACGCCTTGATCTTGCCCTCGA
AGAACTTGCAGCGTCTGGTTACGCCATCATCTGTTCCTCTCTTGATGGTGAGGATTTCAGGAGTTTCGTGAGTTGGCCGC
AAAAGCAGGTTCTCGTTATAGGCAATGAAGCCAACGGGGTTAGCCGTGTGGTTCAGAATCTTGCCGAAAGGCTTGTGCGG
ATTCCTCATGGCGGGGGCAAATCGAGAGTTGAATCCCTGAATGCTTCCGTATCCGCCGCGATCCTTATGGAGCGTCTGGT
GTTATAG

Upstream 100 bases:

>100_bases
ATATGGCGGCCATGTCAAAGCAGGACGGTACGCCCCCGAAAGATTTTTCCCACGCACCCGAGGCTGTGTTTTCAAAGCTG
AAAAAGCCTGGAAAAGAGGT

Downstream 100 bases:

>100_bases
CATAAGGCCGATGGAGTGGTGATTGTTTTTCGTGTTTGTTATGTTATATGGTTTGATGTGATGGAGAGTGTTTTGATGAC
TGAACGAATATGTAAATGGA

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTSSDLNPLSKVKLRRFVKLQEKKYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLREGEIGLGGFPEIPEDKLYVMN
SEQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRSLLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYN
AKVVRSSAGSLYALPHYTVERLDLALEELAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVR
IPHGGGKSRVESLNASVSAAILMERLVL

Sequences:

>Translated_268_residues
MTSSDLNPLSKVKLRRFVKLQEKKYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLREGEIGLGGFPEIPEDKLYVMN
SEQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRSLLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYN
AKVVRSSAGSLYALPHYTVERLDLALEELAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVR
IPHGGGKSRVESLNASVSAAILMERLVL
>Mature_267_residues
TSSDLNPLSKVKLRRFVKLQEKKYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLREGEIGLGGFPEIPEDKLYVMNS
EQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRSLLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYNA
KVVRSSAGSLYALPHYTVERLDLALEELAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVRI
PHGGGKSRVESLNASVSAAILMERLVL

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17555908, Length=160, Percent_Identity=32.5, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324775, Length=201, Percent_Identity=27.363184079602, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29346; Mature: 29215

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSDLNPLSKVKLRRFVKLQEKKYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLRE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GEIGLGGFPEIPEDKLYVMNSEQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRS
CCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCE
LLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYALPHYTVE
EEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHEECCCCCEEECCCHHHH
RLDLALEELAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVR
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
IPHGGGKSRVESLNASVSAAILMERLVL
CCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSSDLNPLSKVKLRRFVKLQEKKYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLRE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GEIGLGGFPEIPEDKLYVMNSEQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRS
CCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCE
LLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYALPHYTVE
EEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHEECCCCCEEECCCHHHH
RLDLALEELAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVR
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
IPHGGGKSRVESLNASVSAAILMERLVL
CCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]