| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357919
Identifier: 119357919
GI number: 119357919
Start: 2466177
End: 2467223
Strand: Direct
Name: 119357919
Synonym: Cpha266_2134
Alternate gene names: NA
Gene position: 2466177-2467223 (Clockwise)
Preceding gene: 119357918
Following gene: 119357924
Centisome position: 78.69
GC content: 48.62
Gene sequence:
>1047_bases ATGGAAAAAATCGATATCAGGCAACTCTCTGACCGAGAGCGCGCATTATTGCGCAAACAGGTCGTTCGGCTTCGAAAGCA AGGTAAAAGCAATAAAGATGTGGCAGAACTTTTAGGGCTATCTGTTCAAACATCGAGTAGATGGTGGCAATGGTACCAAA GAGATGGAAATGCCATGCTTGCCGTGCCGAAACGAGGACGAAAACATGGAGAAAAACGGCACCTGTCGGTTGAGCAGGAA AAGCAGATCCGGAAGATGATTGTTGATCATTATCCGGACCAGTTGAAACTGCCCTTTGCACTCTGGGACCGCCAGGCAGT CCGGCAGTTGATCAAGCTGCAGTTCGGCTTCGAAATGCCTATCCGCACCGTCGGAGAGTATCTCTCGCGATGGGGCTATA CTCCACAGAAGCCGATACGGAAAGCCTATGAGCAACGCCCTGCCGAAGTGGCTCGCTGGATGGAAGAGTCTTATCCGGCT ATCCAGACGCAGGCAAAAGCTGAAAATGCCGAGATTTACTGGGGAGACGAGACCGGCCTCTCAACCCAGGGCAACTTGGT ACGGGGCTATGCTCCTGCTGGCAAAACTCCTGAACTGAGGCTGAATGCTCGCAAGGAACATGTCAGTATGATTTCGGCAA TCAGTAATCGGGGTAAGCTGCGTTTCATGCTCTATGATGATGCCATGAACGGCAAGCGTCTGATAGAATTCATGAAACGT CTGGTCAAGGATGCCGGCCGTAAAGTGATGTTGATTCTCGATAATTTGAGGGTTCATCATTGCAAACCGGTCAAAGAATG GCTCAGCAAAAACAATGATAAAATTGAGGTGTTTTATTTGCCAGCCTATTCACCGGAATTGAATCCCGATGAGTACCTGA ACAACGATCTAAAGAGTGCCGTGCATGGAAACAAGGGCGGCGTTTCACGCAACAAGGAAACGATTCGAAAAAAAACTGTT TCGCATCTGAGGCATCTTCAGAAATCGCCCGGAAAAGTTGCAAAGCTATTCAATCACCCAAAAGTCCTTTATGCGAAAGC TTCGTAG
Upstream 100 bases:
>100_bases AATAGATCGGTTTTTTTGGCGTTAGCAACGCATTGGGGGGGGGGTATTTTTTTCTTATTAATCCGGCAAATAAAACTCGT AATTTTATTATATTACGAGC
Downstream 100 bases:
>100_bases TTTTAATTGCCGGAGTAATAATAAAAAATAGCATTTGCTTTTTTCACTACGGGATGTCCCAAATCCCACAAATCCCACTA AAGAACGGGTTATACGCAGA
Product: transposase and inactivated derivatives
Products: NA
Alternate protein names: Transposase And Inactivated Derivatives-Like Protein; ISXo7 Transposase; Transposase And Inactivated Derivatives; Helix-Turn-Helix Type; Integrase Catalytic Region; ISXoo2 Transposase; Transposase ISC; ISAfe6 Transposase Degenerate; Transposase IS; Transposase Of IS; ISSoc4 Transposase OrfAB; Phosphoadenosine Phosphosulfate Reductase; Cation Diffusion Facilitator Family Transporter; Isxo7 Transposase; Transposase Fragmentary Gene
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MEKIDIRQLSDRERALLRKQVVRLRKQGKSNKDVAELLGLSVQTSSRWWQWYQRDGNAMLAVPKRGRKHGEKRHLSVEQE KQIRKMIVDHYPDQLKLPFALWDRQAVRQLIKLQFGFEMPIRTVGEYLSRWGYTPQKPIRKAYEQRPAEVARWMEESYPA IQTQAKAENAEIYWGDETGLSTQGNLVRGYAPAGKTPELRLNARKEHVSMISAISNRGKLRFMLYDDAMNGKRLIEFMKR LVKDAGRKVMLILDNLRVHHCKPVKEWLSKNNDKIEVFYLPAYSPELNPDEYLNNDLKSAVHGNKGGVSRNKETIRKKTV SHLRHLQKSPGKVAKLFNHPKVLYAKAS
Sequences:
>Translated_348_residues MEKIDIRQLSDRERALLRKQVVRLRKQGKSNKDVAELLGLSVQTSSRWWQWYQRDGNAMLAVPKRGRKHGEKRHLSVEQE KQIRKMIVDHYPDQLKLPFALWDRQAVRQLIKLQFGFEMPIRTVGEYLSRWGYTPQKPIRKAYEQRPAEVARWMEESYPA IQTQAKAENAEIYWGDETGLSTQGNLVRGYAPAGKTPELRLNARKEHVSMISAISNRGKLRFMLYDDAMNGKRLIEFMKR LVKDAGRKVMLILDNLRVHHCKPVKEWLSKNNDKIEVFYLPAYSPELNPDEYLNNDLKSAVHGNKGGVSRNKETIRKKTV SHLRHLQKSPGKVAKLFNHPKVLYAKAS >Mature_348_residues MEKIDIRQLSDRERALLRKQVVRLRKQGKSNKDVAELLGLSVQTSSRWWQWYQRDGNAMLAVPKRGRKHGEKRHLSVEQE KQIRKMIVDHYPDQLKLPFALWDRQAVRQLIKLQFGFEMPIRTVGEYLSRWGYTPQKPIRKAYEQRPAEVARWMEESYPA IQTQAKAENAEIYWGDETGLSTQGNLVRGYAPAGKTPELRLNARKEHVSMISAISNRGKLRFMLYDDAMNGKRLIEFMKR LVKDAGRKVMLILDNLRVHHCKPVKEWLSKNNDKIEVFYLPAYSPELNPDEYLNNDLKSAVHGNKGGVSRNKETIRKKTV SHLRHLQKSPGKVAKLFNHPKVLYAKAS
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40534; Mature: 40534
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKIDIRQLSDRERALLRKQVVRLRKQGKSNKDVAELLGLSVQTSSRWWQWYQRDGNAML CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCEEE AVPKRGRKHGEKRHLSVEQEKQIRKMIVDHYPDQLKLPFALWDRQAVRQLIKLQFGFEMP EECCCCHHCCHHHCCCCHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCCCC IRTVGEYLSRWGYTPQKPIRKAYEQRPAEVARWMEESYPAIQTQAKAENAEIYWGDETGL HHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCCC STQGNLVRGYAPAGKTPELRLNARKEHVSMISAISNRGKLRFMLYDDAMNGKRLIEFMKR CCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH LVKDAGRKVMLILDNLRVHHCKPVKEWLSKNNDKIEVFYLPAYSPELNPDEYLNNDLKSA HHHHCCCEEEEEEECCCHHCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH VHGNKGGVSRNKETIRKKTVSHLRHLQKSPGKVAKLFNHPKVLYAKAS HCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECC >Mature Secondary Structure MEKIDIRQLSDRERALLRKQVVRLRKQGKSNKDVAELLGLSVQTSSRWWQWYQRDGNAML CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCEEE AVPKRGRKHGEKRHLSVEQEKQIRKMIVDHYPDQLKLPFALWDRQAVRQLIKLQFGFEMP EECCCCHHCCHHHCCCCHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCCCC IRTVGEYLSRWGYTPQKPIRKAYEQRPAEVARWMEESYPAIQTQAKAENAEIYWGDETGL HHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCCC STQGNLVRGYAPAGKTPELRLNARKEHVSMISAISNRGKLRFMLYDDAMNGKRLIEFMKR CCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH LVKDAGRKVMLILDNLRVHHCKPVKEWLSKNNDKIEVFYLPAYSPELNPDEYLNNDLKSA HHHHCCCEEEEEEECCCHHCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH VHGNKGGVSRNKETIRKKTVSHLRHLQKSPGKVAKLFNHPKVLYAKAS HCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA