Click here to switch to the map view.

The map label for this gene is yrkJ [H]

Identifier: 119357911

GI number: 119357911

Start: 2456952

End: 2457737

Strand: Reverse

Name: yrkJ [H]

Synonym: Cpha266_2123

Alternate gene names: 119357911

Gene position: 2457737-2456952 (Counterclockwise)

Preceding gene: 119357912

Following gene: 119357910

Centisome position: 78.42

GC content: 51.91

Gene sequence:

>786_bases
ATGCACGAGCAAATATTGTTTGCGGTTCTCTTCCTGATTGGGCTTTGTGGATCCTTTTTTGCCGGTATGCTGGGACTTGG
TGGCGCGATCATTCTCGTGCCCCTGCTGCTTTATCTGCCTCCACTTTTCGGGTTGCCTTCCCTTGACATGAAGCAGATAT
CGGGTATGACGATCGTTGTGGTTTTTGTCTCATCGCTGATTGCTCTCATGGTACAGCACAAGAACCGTTTTGTGTCCAAA
CCCCTTGTGGCGGCGGTAGGCATCACGGCACTTGTCTCCTCGTTCGCCGGGGCAGTATTTTCGAAATCGACCTCAAGTGA
TATGCTTCTTGCGGTCTTTGCCTGTATGGCCGGATTCGCTGCGGTCATCATGTTTATTCCTCGAAAAGAGAGCGGTGGCG
ATATCCCTGCAGAGCAGGTAACTTTCAATATTCCTCTTGCCATCGCTCTTGCCCTGATTCCAGCATTTATCGGTGGTATG
GTCGGGGCACCCGGGGCCTACATTTTTGCGCCGCTGATTATTATTTTTCTCAAGGTTCCGACAAAAGTTGCGATAGGGAG
TACCCTTGGCATCGCATTTCTTGCTTCAGTATCTGGCGCCGCAGGAAAGCTGCTGACTGCCCAGGTGCCTTATGTGCTGA
CTTTTGCCCTGCTTCTTGGCGCCGTTCCTGGAGCGAGGGTTGGGGCGATGTTGACGAAGAAGATTCCTGCCGCTGCCTTG
AAAAAAGGACTTGCCATGGTTATCGCTTTTGCGGCAATCCGGATGTGGATGGATGTGCTCCGATGA

Upstream 100 bases:

>100_bases
GTTTCGGCTTCAAAAGGCGGACTTAAGGATATGCTCGACATTATCCGCGACTCTGACCGGGTGCTCACATTTTAAATCAT
ATTAACAAACGGGGGTGCAT

Downstream 100 bases:

>100_bases
ACGTACACCCGGAGACGGGCTGTTCTGGCTGGGATGAGAGGCGGTGATGAATTGTTACTCAGCCAGTGCCAGCTTGACTG
CTTCGGGTTCACGGGCAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MHEQILFAVLFLIGLCGSFFAGMLGLGGAIILVPLLLYLPPLFGLPSLDMKQISGMTIVVVFVSSLIALMVQHKNRFVSK
PLVAAVGITALVSSFAGAVFSKSTSSDMLLAVFACMAGFAAVIMFIPRKESGGDIPAEQVTFNIPLAIALALIPAFIGGM
VGAPGAYIFAPLIIIFLKVPTKVAIGSTLGIAFLASVSGAAGKLLTAQVPYVLTFALLLGAVPGARVGAMLTKKIPAAAL
KKGLAMVIAFAAIRMWMDVLR

Sequences:

>Translated_261_residues
MHEQILFAVLFLIGLCGSFFAGMLGLGGAIILVPLLLYLPPLFGLPSLDMKQISGMTIVVVFVSSLIALMVQHKNRFVSK
PLVAAVGITALVSSFAGAVFSKSTSSDMLLAVFACMAGFAAVIMFIPRKESGGDIPAEQVTFNIPLAIALALIPAFIGGM
VGAPGAYIFAPLIIIFLKVPTKVAIGSTLGIAFLASVSGAAGKLLTAQVPYVLTFALLLGAVPGARVGAMLTKKIPAAAL
KKGLAMVIAFAAIRMWMDVLR
>Mature_261_residues
MHEQILFAVLFLIGLCGSFFAGMLGLGGAIILVPLLLYLPPLFGLPSLDMKQISGMTIVVVFVSSLIALMVQHKNRFVSK
PLVAAVGITALVSSFAGAVFSKSTSSDMLLAVFACMAGFAAVIMFIPRKESGGDIPAEQVTFNIPLAIALALIPAFIGGM
VGAPGAYIFAPLIIIFLKVPTKVAIGSTLGIAFLASVSGAAGKLLTAQVPYVLTFALLLGAVPGARVGAMLTKKIPAAAL
KKGLAMVIAFAAIRMWMDVLR

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002781 [H]

Pfam domain/function: PF01925 DUF81 [H]

EC number: NA

Molecular weight: Translated: 27052; Mature: 27052

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEQILFAVLFLIGLCGSFFAGMLGLGGAIILVPLLLYLPPLFGLPSLDMKQISGMTIVV
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHCCCCCCCHHHHCCCHHHH
VFVSSLIALMVQHKNRFVSKPLVAAVGITALVSSFAGAVFSKSTSSDMLLAVFACMAGFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AVIMFIPRKESGGDIPAEQVTFNIPLAIALALIPAFIGGMVGAPGAYIFAPLIIIFLKVP
HHHHHHCCCCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
TKVAIGSTLGIAFLASVSGAAGKLLTAQVPYVLTFALLLGAVPGARVGAMLTKKIPAAAL
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
KKGLAMVIAFAAIRMWMDVLR
HHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MHEQILFAVLFLIGLCGSFFAGMLGLGGAIILVPLLLYLPPLFGLPSLDMKQISGMTIVV
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHCCCCCCCHHHHCCCHHHH
VFVSSLIALMVQHKNRFVSKPLVAAVGITALVSSFAGAVFSKSTSSDMLLAVFACMAGFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AVIMFIPRKESGGDIPAEQVTFNIPLAIALALIPAFIGGMVGAPGAYIFAPLIIIFLKVP
HHHHHHCCCCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
TKVAIGSTLGIAFLASVSGAAGKLLTAQVPYVLTFALLLGAVPGARVGAMLTKKIPAAAL
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
KKGLAMVIAFAAIRMWMDVLR
HHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]