Click here to switch to the map view.

The map label for this gene is oprF [H]

Identifier: 119357899

GI number: 119357899

Start: 2442318

End: 2443571

Strand: Direct

Name: oprF [H]

Synonym: Cpha266_2107

Alternate gene names: 119357899

Gene position: 2442318-2443571 (Clockwise)

Preceding gene: 119357898

Following gene: 119357902

Centisome position: 77.93

GC content: 53.35

Gene sequence:

>1254_bases
ATGGCATTACATCTACAGGAACTCATCACCAGAGAACTCTCCGGCGAAAACACCGGAAAAATCGCTGCATTGACAGGCGA
AAGCAATGCCGGCGTTATCGACAGCATCGGAACCGCTTCTGCTACGATCATGGGCGGACTCATGAACAAAGCGGCCACAC
CTGACGGCGCCACTGAAATTTTAACCCGCATTACCAGCAGCGGTTACAACGGGGATTTCTTAAACCGTTTCGGAGATATG
CTTTCCAGTGACCGTGGAGCCGATACGCTGCTTGAATCCGGAAAAGAGCTGCTTGGGTGCCTCTTCGGCAGCAAACTCGA
TGAACTTGACAAGGTGTTTTCATCGGCAACCGGTCGGGCAAAAGGCTCTTCATTGTCGCTGCTCGCCATCATCGCCCCGG
TTGTTATGAGTATACTTGGCAAAAAGGTTGACGCTGACAATCTGGGCTCTCTCGGTCTTATGAGTCTCCTGAACTCCCAG
AAATCTTTTGTGCAGAGTGCGGCTCCCTCTCGTCTTTCCGGAGTACTCGGCCTCCTGAGCCTCTCCCAGCTCGGAGGCAT
GCCGCCATCATCACCCACAGGAATTCCCGGCAACATTCCTTCGTTCCTCAAAGGGCTCTGGCCATTTTTCCTTATCCTTG
CAGCACTTTTTCTCTTGATAAATACCTGTTCATCTCCTTCCGGTCAGGAAACGCCGCCTGCAACAGAGGCCGTTGCAACC
GACACGGTGACGGCTCCTGAAACAGCTCCCGCGCCACTCCCCGCCGACACGTCTGCCGTAACCAGCGACGCTCTTGGAGC
ATTCGAAGAGTATGCCCTGCCCAACGGCGTGAAGCTGAACATACCGGAACTCGGTATCGAGAGAAAACTGATCGCTTTTA
TCCAGGACGCTACCAAACCTGCCGACAAGGAGACCTGGTTCTCGTTCGACCGACTTGTTTTCGATACCGGCAAGTCAACG
CTCATGGCGACATCACAGGAACAGCTCAACAACATCGGTGAAATTCTCAAGGCCTATCCTGCCGTTGAGCTGAAAATCGG
CGGCTATACCGATAACGTCGGCGACCCGCAGGCCAACAAGAAACTCTCGCAGGCCAGAGCTGAAACAGTCATGGCTGAAC
TGGTTAAACTCGGCATCGACAACATAAGGCTTGCTGCCGAAGGGTACGGCATCGAACACCCGGTAGCCGACAATGCAACC
GAAGAAGGAAGACAGCAGAACAGAAGAGTCGATTGCAGAGTCACGAAAAAATAA

Upstream 100 bases:

>100_bases
GACTGTTTGTTTCTTCTGCCTCGCAAGGATCTTGCTCAACGCGTCATCATTCCTTTTTCTTAAACTTTCTTTCAAAAAGC
AACAAAAGGAGGAGATCGTT

Downstream 100 bases:

>100_bases
ACGCAATCGGCTATTTGACATCAGCAAAAAGGCTGCCCGCAAAGGCAGCCTTTTTGTTGCGATCTTTTTGTTTTTTTTCC
AAGCCTCGATGAAGTACAGT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MALHLQELITRELSGENTGKIAALTGESNAGVIDSIGTASATIMGGLMNKAATPDGATEILTRITSSGYNGDFLNRFGDM
LSSDRGADTLLESGKELLGCLFGSKLDELDKVFSSATGRAKGSSLSLLAIIAPVVMSILGKKVDADNLGSLGLMSLLNSQ
KSFVQSAAPSRLSGVLGLLSLSQLGGMPPSSPTGIPGNIPSFLKGLWPFFLILAALFLLINTCSSPSGQETPPATEAVAT
DTVTAPETAPAPLPADTSAVTSDALGAFEEYALPNGVKLNIPELGIERKLIAFIQDATKPADKETWFSFDRLVFDTGKST
LMATSQEQLNNIGEILKAYPAVELKIGGYTDNVGDPQANKKLSQARAETVMAELVKLGIDNIRLAAEGYGIEHPVADNAT
EEGRQQNRRVDCRVTKK

Sequences:

>Translated_417_residues
MALHLQELITRELSGENTGKIAALTGESNAGVIDSIGTASATIMGGLMNKAATPDGATEILTRITSSGYNGDFLNRFGDM
LSSDRGADTLLESGKELLGCLFGSKLDELDKVFSSATGRAKGSSLSLLAIIAPVVMSILGKKVDADNLGSLGLMSLLNSQ
KSFVQSAAPSRLSGVLGLLSLSQLGGMPPSSPTGIPGNIPSFLKGLWPFFLILAALFLLINTCSSPSGQETPPATEAVAT
DTVTAPETAPAPLPADTSAVTSDALGAFEEYALPNGVKLNIPELGIERKLIAFIQDATKPADKETWFSFDRLVFDTGKST
LMATSQEQLNNIGEILKAYPAVELKIGGYTDNVGDPQANKKLSQARAETVMAELVKLGIDNIRLAAEGYGIEHPVADNAT
EEGRQQNRRVDCRVTKK
>Mature_416_residues
ALHLQELITRELSGENTGKIAALTGESNAGVIDSIGTASATIMGGLMNKAATPDGATEILTRITSSGYNGDFLNRFGDML
SSDRGADTLLESGKELLGCLFGSKLDELDKVFSSATGRAKGSSLSLLAIIAPVVMSILGKKVDADNLGSLGLMSLLNSQK
SFVQSAAPSRLSGVLGLLSLSQLGGMPPSSPTGIPGNIPSFLKGLWPFFLILAALFLLINTCSSPSGQETPPATEAVATD
TVTAPETAPAPLPADTSAVTSDALGAFEEYALPNGVKLNIPELGIERKLIAFIQDATKPADKETWFSFDRLVFDTGKSTL
MATSQEQLNNIGEILKAYPAVELKIGGYTDNVGDPQANKKLSQARAETVMAELVKLGIDNIRLAAEGYGIEHPVADNATE
EGRQQNRRVDCRVTKK

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=133, Percent_Identity=31.5789473684211, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 43787; Mature: 43656

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALHLQELITRELSGENTGKIAALTGESNAGVIDSIGTASATIMGGLMNKAATPDGATEI
CCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCCCHHHHH
LTRITSSGYNGDFLNRFGDMLSSDRGADTLLESGKELLGCLFGSKLDELDKVFSSATGRA
HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
KGSSLSLLAIIAPVVMSILGKKVDADNLGSLGLMSLLNSQKSFVQSAAPSRLSGVLGLLS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LSQLGGMPPSSPTGIPGNIPSFLKGLWPFFLILAALFLLINTCSSPSGQETPPATEAVAT
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
DTVTAPETAPAPLPADTSAVTSDALGAFEEYALPNGVKLNIPELGIERKLIAFIQDATKP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHCCC
ADKETWFSFDRLVFDTGKSTLMATSQEQLNNIGEILKAYPAVELKIGGYTDNVGDPQANK
CCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH
KLSQARAETVMAELVKLGIDNIRLAAEGYGIEHPVADNATEEGRQQNRRVDCRVTKK
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEECCC
>Mature Secondary Structure 
ALHLQELITRELSGENTGKIAALTGESNAGVIDSIGTASATIMGGLMNKAATPDGATEI
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCCCHHHHH
LTRITSSGYNGDFLNRFGDMLSSDRGADTLLESGKELLGCLFGSKLDELDKVFSSATGRA
HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
KGSSLSLLAIIAPVVMSILGKKVDADNLGSLGLMSLLNSQKSFVQSAAPSRLSGVLGLLS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LSQLGGMPPSSPTGIPGNIPSFLKGLWPFFLILAALFLLINTCSSPSGQETPPATEAVAT
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
DTVTAPETAPAPLPADTSAVTSDALGAFEEYALPNGVKLNIPELGIERKLIAFIQDATKP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHCCC
ADKETWFSFDRLVFDTGKSTLMATSQEQLNNIGEILKAYPAVELKIGGYTDNVGDPQANK
CCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH
KLSQARAETVMAELVKLGIDNIRLAAEGYGIEHPVADNATEEGRQQNRRVDCRVTKK
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]