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The map label for this gene is oprF [H]

Identifier: 119357876

GI number: 119357876

Start: 2417553

End: 2418566

Strand: Reverse

Name: oprF [H]

Synonym: Cpha266_2084

Alternate gene names: 119357876

Gene position: 2418566-2417553 (Counterclockwise)

Preceding gene: 119357877

Following gene: 119357875

Centisome position: 77.17

GC content: 52.27

Gene sequence:

>1014_bases
ATGAAACCACTCAAGGCGTTACTCTTGTTACTGTTTATAGTTGCATCGCTGCCGTTTCGGGATGCCGTTGCTGCGGATTT
GCCCGGTTCGAAGGATCATCCTCTGCTGAAGCGGTTTGCCGGATCGGAAATTGTCGCTTACCAGGCCAAGCGGTTTGACG
AATACGAGCTGCAGACATCGACCTTCAGCCGCTATAATTTTGCGACAAAAAAACGGGAGTATCTTAAACCCCCGTTGAAG
CCCGAAGGGAGGCTTACCCGAATCTGGTACGAGGCTGCCGGAGATTACGGATCGCTCGAAATATACCGGAACTATCTCAA
TGAGCTCAGGGCAAAGGGTTTCGTTATCCTGTACGACTCCAAAAAAGACCCGGCAGCCATCGGGTGGATCAACTATCTTG
CTCCGTTCGGTTCCATGGATATTCAGACCAATCGGAGTAACTACATATTTTTTGCTGCTGAAAAGGGTGGAATCTGTGTC
GCAAGCGCAAAAAAAAGCCGCCCGGAAGGCGATGTCTATGTGCAGTTGATAGCCGTAGAGTGGGGGAAGAACGACCCGGT
CTACAAGGCAAAACGGGGGGCCTATATCGCGGTTGATGTTGTTGAGACCCAGCCGATGGTTCAGAAAATGGTGACGGTCA
GTGCCGATCAGATGACCCAGGCCATAACCTCGACAGGCAGAGTATCGCTTTACGGTATTTATTTTGATACCAACAAATCC
GATATCAAGCCGGCTTCTTCGCCGGCGCTGGTTGAAATAGCCAAACTCATGAAAAGTCAGCCCGCACTGAAACTGCATGT
GGTCGGTCATACGGATAATGTCGGAGGGTATGAGTTTAACATGGGCCTTTCCAAACGCCGTGCCGACGCCGTCGTAGCCT
CGCTGGTAAGGAATCACGGTATTGCGCCGGCCCGCCTTGCGGCTAACGGCGTAGCCTATCTCGCTCCGGTAGCGCCAAAT
ACAACGGAAGCCGGCAGGGCGAAAAACCGGCGTGTTGAACTGGTGCCGAGATAA

Upstream 100 bases:

>100_bases
GGCGAAGGGCACTCCAAGGCCATCTACGTGCGCGATAAACGAAAAAAGTCCGATACATAAAAGCACCTGAACCAAAACAT
GTCATAAGGAGGTCACTCTC

Downstream 100 bases:

>100_bases
GGGGCGCCGCGCTCTCCTGTCGGCAAGCGGTGCAGGTGAGAGGCTGTCGGGAGAACTCCGGGGAGGGGAGAACGAGATGA
AATCTTCCCGGAGATCGAAA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKPLKALLLLLFIVASLPFRDAVAADLPGSKDHPLLKRFAGSEIVAYQAKRFDEYELQTSTFSRYNFATKKREYLKPPLK
PEGRLTRIWYEAAGDYGSLEIYRNYLNELRAKGFVILYDSKKDPAAIGWINYLAPFGSMDIQTNRSNYIFFAAEKGGICV
ASAKKSRPEGDVYVQLIAVEWGKNDPVYKAKRGAYIAVDVVETQPMVQKMVTVSADQMTQAITSTGRVSLYGIYFDTNKS
DIKPASSPALVEIAKLMKSQPALKLHVVGHTDNVGGYEFNMGLSKRRADAVVASLVRNHGIAPARLAANGVAYLAPVAPN
TTEAGRAKNRRVELVPR

Sequences:

>Translated_337_residues
MKPLKALLLLLFIVASLPFRDAVAADLPGSKDHPLLKRFAGSEIVAYQAKRFDEYELQTSTFSRYNFATKKREYLKPPLK
PEGRLTRIWYEAAGDYGSLEIYRNYLNELRAKGFVILYDSKKDPAAIGWINYLAPFGSMDIQTNRSNYIFFAAEKGGICV
ASAKKSRPEGDVYVQLIAVEWGKNDPVYKAKRGAYIAVDVVETQPMVQKMVTVSADQMTQAITSTGRVSLYGIYFDTNKS
DIKPASSPALVEIAKLMKSQPALKLHVVGHTDNVGGYEFNMGLSKRRADAVVASLVRNHGIAPARLAANGVAYLAPVAPN
TTEAGRAKNRRVELVPR
>Mature_337_residues
MKPLKALLLLLFIVASLPFRDAVAADLPGSKDHPLLKRFAGSEIVAYQAKRFDEYELQTSTFSRYNFATKKREYLKPPLK
PEGRLTRIWYEAAGDYGSLEIYRNYLNELRAKGFVILYDSKKDPAAIGWINYLAPFGSMDIQTNRSNYIFFAAEKGGICV
ASAKKSRPEGDVYVQLIAVEWGKNDPVYKAKRGAYIAVDVVETQPMVQKMVTVSADQMTQAITSTGRVSLYGIYFDTNKS
DIKPASSPALVEIAKLMKSQPALKLHVVGHTDNVGGYEFNMGLSKRRADAVVASLVRNHGIAPARLAANGVAYLAPVAPN
TTEAGRAKNRRVELVPR

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=103, Percent_Identity=36.8932038834951, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 37287; Mature: 37287

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLKALLLLLFIVASLPFRDAVAADLPGSKDHPLLKRFAGSEIVAYQAKRFDEYELQTS
CCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHCCCCEEEEHHHCCCCEEEEHH
TFSRYNFATKKREYLKPPLKPEGRLTRIWYEAAGDYGSLEIYRNYLNELRAKGFVILYDS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEC
KKDPAAIGWINYLAPFGSMDIQTNRSNYIFFAAEKGGICVASAKKSRPEGDVYVQLIAVE
CCCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEEE
WGKNDPVYKAKRGAYIAVDVVETQPMVQKMVTVSADQMTQAITSTGRVSLYGIYFDTNKS
ECCCCCCEEECCCCEEEEEEECCCHHHHHHHHHCHHHHHHHHHCCCCEEEEEEEEECCCC
DIKPASSPALVEIAKLMKSQPALKLHVVGHTDNVGGYEFNMGLSKRRADAVVASLVRNHG
CCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCC
IAPARLAANGVAYLAPVAPNTTEAGRAKNRRVELVPR
CCHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCC
>Mature Secondary Structure
MKPLKALLLLLFIVASLPFRDAVAADLPGSKDHPLLKRFAGSEIVAYQAKRFDEYELQTS
CCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHCCCCEEEEHHHCCCCEEEEHH
TFSRYNFATKKREYLKPPLKPEGRLTRIWYEAAGDYGSLEIYRNYLNELRAKGFVILYDS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEC
KKDPAAIGWINYLAPFGSMDIQTNRSNYIFFAAEKGGICVASAKKSRPEGDVYVQLIAVE
CCCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEEE
WGKNDPVYKAKRGAYIAVDVVETQPMVQKMVTVSADQMTQAITSTGRVSLYGIYFDTNKS
ECCCCCCEEECCCCEEEEEEECCCHHHHHHHHHCHHHHHHHHHCCCCEEEEEEEEECCCC
DIKPASSPALVEIAKLMKSQPALKLHVVGHTDNVGGYEFNMGLSKRRADAVVASLVRNHG
CCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCC
IAPARLAANGVAYLAPVAPNTTEAGRAKNRRVELVPR
CCHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1898935 [H]