| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is yihX [H]
Identifier: 119357688
GI number: 119357688
Start: 2193645
End: 2194277
Strand: Reverse
Name: yihX [H]
Synonym: Cpha266_1892
Alternate gene names: 119357688
Gene position: 2194277-2193645 (Counterclockwise)
Preceding gene: 119357689
Following gene: 119357687
Centisome position: 70.02
GC content: 52.45
Gene sequence:
>633_bases ATGCATCTACCAGTAACTGAATCCGTACCCATGAGCATTATTCTTCTTGATATAGGTAACGTGCTGGTATCGGTTGATTT TATGCCTTTCTGCAGGGCGGTGGCCGTTGATCCGGTTTCAGGTGCTGAGGAGATATTCCGTCACTATTGTACCGGGACGC TGAAAGAAAAACTTGAAACCGGCCTGATCGCGCCGTTCGAATATCTTGCCGCGATTGCCCGCGACCCGCTTGCCAAAGCT CTTTCGCTGCATGATCTCAGGCAGGAGTGGCAGAATATTTTCGAGCCGCTGGAGGGTGCTCTTGAGGCTGTCAGGCTGCT CAGGGAGCAGCATGCCATCTGGATCATGAGCGATACCGATCCGCTTCATTTTACCTTTCTGCTCAACCATTATCCGGTTT TGAAAGAGGCTGACCGGTACTGGCTCTCTTTTGAGCACGGGAGGATGAAGAGCAGTGTCGAAGCCTTTTCGCACCTGCTC GAACGTTCAGGTCGGAGGGGTGATGAGTTTACGCTGATCGACGACAAGGCCGAAAATTGTGCCGCAGCTTCAACAGCAGG TATCAGGAGCATACAGTTTCGGAGCTGGGAGGATGCGCTCCAGCAGCTTTGGGAACAGGAGCGAAATGGATGA
Upstream 100 bases:
>100_bases GGAATATTGTTAGCAAAGAACGTCCTGACTGAGTAAAGGGAAACACTTCCAGTCAAATAAGCTGCAATGGCATATATTCC CCTGAACAGAGCAACAAGTG
Downstream 100 bases:
>100_bases CGCCTCGTTTCTGCTGCAATGTCCCGGGTTGTATCTGATTGGATATGGTGTTGCAGGTAATGTTTTTTTCCCATACGTTT TCTGTTATGAGGTGTTTGAC
Product: HAD family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MHLPVTESVPMSIILLDIGNVLVSVDFMPFCRAVAVDPVSGAEEIFRHYCTGTLKEKLETGLIAPFEYLAAIARDPLAKA LSLHDLRQEWQNIFEPLEGALEAVRLLREQHAIWIMSDTDPLHFTFLLNHYPVLKEADRYWLSFEHGRMKSSVEAFSHLL ERSGRRGDEFTLIDDKAENCAAASTAGIRSIQFRSWEDALQQLWEQERNG
Sequences:
>Translated_210_residues MHLPVTESVPMSIILLDIGNVLVSVDFMPFCRAVAVDPVSGAEEIFRHYCTGTLKEKLETGLIAPFEYLAAIARDPLAKA LSLHDLRQEWQNIFEPLEGALEAVRLLREQHAIWIMSDTDPLHFTFLLNHYPVLKEADRYWLSFEHGRMKSSVEAFSHLL ERSGRRGDEFTLIDDKAENCAAASTAGIRSIQFRSWEDALQQLWEQERNG >Mature_210_residues MHLPVTESVPMSIILLDIGNVLVSVDFMPFCRAVAVDPVSGAEEIFRHYCTGTLKEKLETGLIAPFEYLAAIARDPLAKA LSLHDLRQEWQNIFEPLEGALEAVRLLREQHAIWIMSDTDPLHFTFLLNHYPVLKEADRYWLSFEHGRMKSSVEAFSHLL ERSGRRGDEFTLIDDKAENCAAASTAGIRSIQFRSWEDALQQLWEQERNG
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrate beta-glucose 1-phosphate [H]
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. YihX family [H]
Homologues:
Organism=Escherichia coli, GI87082345, Length=185, Percent_Identity=29.1891891891892, Blast_Score=69, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 23955; Mature: 23955
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLPVTESVPMSIILLDIGNVLVSVDFMPFCRAVAVDPVSGAEEIFRHYCTGTLKEKLET CCCCCCCCCCCEEHEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHH GLIAPFEYLAAIARDPLAKALSLHDLRQEWQNIFEPLEGALEAVRLLREQHAIWIMSDTD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC PLHFTFLLNHYPVLKEADRYWLSFEHGRMKSSVEAFSHLLERSGRRGDEFTLIDDKAENC CEEEEEHHHCCCHHHHCCHHHEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH AAASTAGIRSIQFRSWEDALQQLWEQERNG HHHHHHCHHHHCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MHLPVTESVPMSIILLDIGNVLVSVDFMPFCRAVAVDPVSGAEEIFRHYCTGTLKEKLET CCCCCCCCCCCEEHEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHH GLIAPFEYLAAIARDPLAKALSLHDLRQEWQNIFEPLEGALEAVRLLREQHAIWIMSDTD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC PLHFTFLLNHYPVLKEADRYWLSFEHGRMKSSVEAFSHLLERSGRRGDEFTLIDDKAENC CEEEEEHHHCCCHHHHCCHHHEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH AAASTAGIRSIQFRSWEDALQQLWEQERNG HHHHHHCHHHHCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8346018; 9278503 [H]