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The map label for this gene is cspA [H]

Identifier: 119357559

GI number: 119357559

Start: 2004365

End: 2004622

Strand: Reverse

Name: cspA [H]

Synonym: Cpha266_1762

Alternate gene names: 119357559

Gene position: 2004622-2004365 (Counterclockwise)

Preceding gene: 119357563

Following gene: 119357552

Centisome position: 63.97

GC content: 48.06

Gene sequence:

>258_bases
ATGGCAAGAAGTAAGGTTAAATGGTTTGACGGGAAAAAAGGCTACGGCTTTATTGTGAACCCTGAAGGCGGAGAGGATAT
TTTCGTCCATTTTTCCGCCATTATCTGTGAGCAGAGTTTCAAGGTTCTCAATCAGGACGCTGACGTGGACTTTGAGCTTG
AGAAAACCCAGAAAGGGTTTCAGGCAAAGAATGTTCGCGAAGTTCCCGTAACCGGTGCATCGGAATCACCGTCTCTTGAC
GTGGCTGTGGCGGGATAG

Upstream 100 bases:

>100_bases
ATGAACCGATAAAAAACTTGTATATTAAGAAGTAAAAAAAACGGCAGAGCGGTAACCGCCGCTTTGCTCCTGCTTTTAAT
GATAAATCCCCGTGTTTGTC

Downstream 100 bases:

>100_bases
ATCCGTTCACTTCTCAAGACGCACCGAGATCCTCATCGCGAGGCAGAAGCAACATTTTCAAAAAAGGGAACCGGTACAGG
CGGCAATTCGCTGTCATGGT

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MARSKVKWFDGKKGYGFIVNPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQKGFQAKNVREVPVTGASESPSLD
VAVAG

Sequences:

>Translated_85_residues
MARSKVKWFDGKKGYGFIVNPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQKGFQAKNVREVPVTGASESPSLD
VAVAG
>Mature_84_residues
ARSKVKWFDGKKGYGFIVNPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQKGFQAKNVREVPVTGASESPSLDV
AVAG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=60, Percent_Identity=46.6666666666667, Blast_Score=61, Evalue=2e-11,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=45.4545454545455, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 9310; Mature: 9178

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSKVKWFDGKKGYGFIVNPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQKGF
CCCCCCEEECCCCCCEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCEEECCCCCCC
QAKNVREVPVTGASESPSLDVAVAG
CCCCEEECCCCCCCCCCCEEEEEEC
>Mature Secondary Structure 
ARSKVKWFDGKKGYGFIVNPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQKGF
CCCCCEEECCCCCCEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCEEECCCCCCC
QAKNVREVPVTGASESPSLDVAVAG
CCCCEEECCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA