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The map label for this gene is intB [H]

Identifier: 119357428

GI number: 119357428

Start: 1848779

End: 1850038

Strand: Reverse

Name: intB [H]

Synonym: Cpha266_1627

Alternate gene names: 119357428

Gene position: 1850038-1848779 (Counterclockwise)

Preceding gene: 119357430

Following gene: 119357427

Centisome position: 59.03

GC content: 51.98

Gene sequence:

>1260_bases
ATGCCAAAACGAATTCTCCCTCTTTCCGATGCTCAGGTGAGCAAGGCCAAGCCGGCTGAAAAGGATTATAAGCTTTCGGA
TGGTGGTGGCTTGCATCTTCTTGTTACTACCAGCGGTGGTAAGCTTTGGCGTTTTCAGTATCGTTTCGACGGTAAACAGA
AGCTGCTCGCTTTGGGGCAATACCCTGAAATCTCCCTTGCTAATGCCCGGAAGCGGCGGGAGGAGGCTCGAACCCTTCTT
GCAAATGAACAGGATCCCAGCGAGGCAAAAAAGGCTGCAAAAAAGGCTGAGGCATTGAAGGATGCTTCGTCTTTTGAGCT
TGTGGCCCGGGAGTGGTTCGGCAAGAATGATCCGGTATGGTCGCCGGGACATGCTTTGACGGTGATGTGCCGGCTTGAGA
AGGATGTGTTTCCGGCTATCGGCAGCAAACCGGTTTCTGAAATTACGGCTTCGGATATCCGGACAATGTTACTGAAGATC
GAGGCCAGGGGGGCGGTGGAAACGGCTACAAGAATCAAGATCATGTGTGGACAGGTGTTCAGGTATGCTGTGGCAACCGG
AAGGCTTGAGCATGATCCTTCGGCGGCTTTGAAGTCGCGTGAGATTTTCCGGAAACGTGAAATACGACACCATGCCGCCA
TTACGGATCCGAAAGAATTGGCTCCCTTGCTGATGGCGATTGATGAGTATCAGGGAACCTTTGTGGTGAAATCGGCTTTG
CAGCTTACTCCTTTGCTTTTTGTCCGGCCCGGTGAGCTTCAGAATATGGAGTGGTCAGATATTGATTTCGAGGAGGCGTT
GTGGTCAATTCCGGCGGAACGCATGAAGATGCGGCAGCCGCACCTTGTTCCGCTTTCCCGGCAGTCATTGAGTATTTTGC
AGGGGTTACATCCTGCAACCGGACATGGAAGATATGTGTTTACCGGACGTGGTAGCCGACCAATGAGTAATAATAGCATT
AATGCAGCCCTTCGATATCTGGGTTATGACAGTGACACGGTTACCGGTCATGGGTTCAGGGCGACAGCCCGCACGATTCT
TGATGAAGTTCTGGGTTTCAGGGTTGATTTGATCGAGCACCAGTTGGCTCATGCGGTCCGGGATCCGAACGGGCGCGCCT
ATAATCGAACCTCTTTTCTTGACGATCGACGGCAGATGATGCAGGCTTGGGCGGATTATCTGTACAGCCTGAAGGCTGGG
GTGAAGATGCCGGCATCGGGAGTTTTACCCCTAACACGGAAAAAAAAGGCGCTTGTATAG

Upstream 100 bases:

>100_bases
TCTAAATTGGTATTGTGAAGTCCGGGGTTTTTGGTGGTGTTTTTTGTGGTAGATGCCATCAAGGGGATTTCGAATACCAT
CAAGATAAAATTCGACGACA

Downstream 100 bases:

>100_bases
GCGCCTTTTTTCATATTAGAGAAACAGGTTTTGCTGTATATGATGTAAAATCCACATGGTTTTTAATACATTTATATTCA
ACTTGTTTCCATATAACCAT

Product: phage integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MPKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEISLANARKRREEARTLL
ANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVWSPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKI
EARGAVETATRIKIMCGQVFRYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSAL
QLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGHGRYVFTGRGSRPMSNNSI
NAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAG
VKMPASGVLPLTRKKKALV

Sequences:

>Translated_419_residues
MPKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEISLANARKRREEARTLL
ANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVWSPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKI
EARGAVETATRIKIMCGQVFRYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSAL
QLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGHGRYVFTGRGSRPMSNNSI
NAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAG
VKMPASGVLPLTRKKKALV
>Mature_418_residues
PKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEISLANARKRREEARTLLA
NEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVWSPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIE
ARGAVETATRIKIMCGQVFRYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSALQ
LTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGHGRYVFTGRGSRPMSNNSIN
AALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAGV
KMPASGVLPLTRKKKALV

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=401, Percent_Identity=38.4039900249377, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1788974, Length=404, Percent_Identity=35.8910891089109, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1788690, Length=391, Percent_Identity=34.7826086956522, Blast_Score=234, Evalue=6e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46958; Mature: 46827

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQ
CCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCEEEEEEEEECCCHHHHEECC
YPEISLANARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVW
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
SPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQVF
CCCCEEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
RYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSAL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
QLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPAT
HHCCEEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCC
GHGRYVFTGRGSRPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEH
CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAGVKMPASGVLPLTRKKKALV
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKRILPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQ
CCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCEEEEEEEEECCCHHHHEECC
YPEISLANARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVW
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
SPGHALTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQVF
CCCCEEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
RYAVATGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSAL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
QLTPLLFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPAT
HHCCEEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCC
GHGRYVFTGRGSRPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEH
CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QLAHAVRDPNGRAYNRTSFLDDRRQMMQAWADYLYSLKAGVKMPASGVLPLTRKKKALV
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]