| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is hsdR [H]
Identifier: 119357299
GI number: 119357299
Start: 1695958
End: 1698753
Strand: Reverse
Name: hsdR [H]
Synonym: Cpha266_1495
Alternate gene names: 119357299
Gene position: 1698753-1695958 (Counterclockwise)
Preceding gene: 119357300
Following gene: 119357298
Centisome position: 54.21
GC content: 54.29
Gene sequence:
>2796_bases ATGCAGGAACGATATTCTCTGAACCAGACTCCCGAGCAGATTGCGCGGGATGTTATCGATGTACAGTTGCGGCTGGCAGG TTGGGCTGTTCAGGAAAAAAATCGCATCGACTGGCAGGTTTCGTCGGGTATAGCCGTGAGGCATTATCCTACACAGGATG GTCTTGAAGCCGATTATGTTCTGTTTGTCGACCGCAGGCCGGTCGGGGTCATCGAGGCGAAAAAAGAGGATGAGGGGCAT CATCTTACCGTGGTTGAAGAGCAGTCTTTCGGATATGCCGAAAGCAAGCTGAAGCATCTCAACAACGATCCGCTGCCGTT TGTTTACGAAAGTACCGGCACGTTGACCCGCTTTACCGATTACCGCGATCCGAAACCCCGTTCACGACCCGTCTTTACTT TTCACCGTCCCGAGACATTTCGTGAATGGCTCGGCCAGGAGCGGAGCCTCCGGGAACGCCTTTATGATATTCCCGGACTG AATCCTGCCGCTTTGCGGGAGTGCCAGACCATGGCAATCAACAACCTCGAAAGCTCTTTTCGGGACGGACGACCCAGAGC GCTGATCCAGATGGCGACCGGCTCCGGCAAGACCTTCGCTGCCATTACCTTTATTTACCGTTTGCTCAAACATGCCGATG CCAAACGGATACTCTTTCTGGTCGATACCCGCAACCTCGGCGAACAGGCAGAGCAGGAGTTCAGGGCATACACGCCGAAC GACGATAACCGAAAATTCGTAGAACTGTACAACGTGCAGCGGTTGCAGTCAAGCTCGATTGCCGGCGACAGTCAGGTCTG CATCACCACCATCCAGCGGCTCTATTCCATCCTGAAAGGGGAGGAGCTTGACGCTTCGCTTGAGGAGCAAAATCCTGCTG AAAAAAGCTGGCAGCCGAAGGAGCCTGTTCCGGTGGCATACAATGCGAAGGTTCCCATAGAGTTTTTCGACTTCATTGTC ATCGACGAGTGTCATCGCTCGATCTACAATCTCTGGAAGCAGGTGCTCGACTATTTCGACGCATTCCTGATTGGCCTGAC CGCAACGCCCGACAAGCGCACCTTTGGTTTTTTCAACGAAAACATCGTGAGCGAATACAGTCACGAACGAGCCGTGGCAG ACGGGGTCAACGTCGGTTACGATGTCTATACCATCGAGACTGAAATAACCCGGAACGGCTCCCGGATAAGGGCTCGGGAG TTTATCGACAAACGTGAAAAACTCTCTCGCCGCAAACGGTGGGAGCAGCTTGAAGATGATGTTGTCTATACGTCGTCGCA GCTTGACCGGGATGTGGTGAACCCGAGCCAGATCCGCAACGTCATCCGCGCGTTCCGTGATGCACTTCCGGTTTTGTTTC CCGGACGAACCGAGGTGCCCAAGACCCTTGTATTTGCAAAGACCGACAGCCATGCCGACGATATCATCCAGATTATCCGT GAGGAGTTCAACGAAGGGAACGCATTCTGTAACAAGATAACCTACAAGGCCGAAGACGACCCGAAATCGCTGCTTGCCCG GTTCCGGAACGAGTACAACCCGAGAATAGCCGTTACGGTCGATATGATAGCCACGGGCACCGACGTCAAGCCGCTCGAAT GCCTGCTGTTCATGCGCGACGTCAGAAGCAGCAACTATTTCGAGCAGATGAAAGGGCGGGGCACACGGACGCTCAGTTTT GACGATCTGAAAAAGGTTACCCCATCGGTTACTTCCGCCAAAACTCATTTCGTGATCATCGACGCCGTAGGGGTGACAAA ATCCCTGAAGACCGACAGCCGCCCGCTCGAACGCAAGCCGACGGCATCGCTGAAGGAGTTGCTTGAAGCTGTAACCTTCG GGGCACAGGATGAGGATCTCTACACCTCGCTTGCCAACCGCCTTGCCCGGCTCGACAAGCAGATTACCGAACAGGAGCGT GCGGCATTTATCGACAAAACCGGAGGCAAGAGCATCAATCAGGTTGTTCGCGAACTACTCGACTCATGGGATCCCGACAG CATCAACCGGAAAGCCCGGGAGATGAACCCGGAGGCAGTTCAGGAGATGGGCGAAAGCCCCTCTGGCGAAACAACCATGT TTCTTGAACAGGCGCAGCAGGCGCTCCTTCACGAAGCCCGATTGACCTTCAACGGCTCGCTGAACGAATTCATCGACACC GTTCGCCGGGTGCATGAGCAGATCATCGATACGGTCAATCTCGATCAGGTAACGAGGTCAGAATGGGCAGCAGAAAGTGG TGAAAAGGCAGCAGAACTGATCGGGGAGTTCAAGGCCTATCTTGAAGCGCACAAGGACGAAATCACCGCGCTCGGAATAT TTTACAATCAGCCCTACCGGCGCAGGGAGCTGACCTTCAGGATGATCAGGGAAGTGCTTGACCGTCTCAAAGCCGACAGG CCGATGCTTGCCCCGATGCGTATCTGGCATGCCTATGAACAGATCGAAAAGGTTAACGGTTCGAGCCCGAAAAACGAACT CATTGCCCTTGTTGCGCTCATCCGCCGGGTAACCGGCATCGATCCGGTTCTGACCGTTTACGACAGAACCGTTGACGCGA ATTTCAAGCAGTGGGTGTTCAGCAGGCACTCCGACGCCGGTGACAAGTTCACCGAGGAGCAGATGAATTGGCTTCGCATG ATCAAGGAGCATATCGCTTCAAGCATCCACATGGAGCAGGACGACCTCGATCTCACACCGTTCGACGCCTATGGGGGTCG CGGCAGGATGTGGCAACTTTTCGGGGATCGTATGGATGGGATTATCGACGAACTTAACGAAGCGTTGACGGTATGA
Upstream 100 bases:
>100_bases ATCCATGAGTCTCTTGAAGATGGCTCTGTCCAAAGCAATATTATTGTGTTATATTTAAAGCTTATGCGGGTTATGCTCCA TAACCATTCATGCCGGTGCC
Downstream 100 bases:
>100_bases AAAAAAAGGATTCACAAAAAAACATGTATGCTCATTCCGAAAAGAAAGTTGAGCTCTTGCAAAAATATTTAGAAATATAT CTAAATGTATTGAGTAATAC
Product: type III restriction enzyme, res subunit
Products: NA
Alternate protein names: R.EcoKI [H]
Number of amino acids: Translated: 931; Mature: 931
Protein sequence:
>931_residues MQERYSLNQTPEQIARDVIDVQLRLAGWAVQEKNRIDWQVSSGIAVRHYPTQDGLEADYVLFVDRRPVGVIEAKKEDEGH HLTVVEEQSFGYAESKLKHLNNDPLPFVYESTGTLTRFTDYRDPKPRSRPVFTFHRPETFREWLGQERSLRERLYDIPGL NPAALRECQTMAINNLESSFRDGRPRALIQMATGSGKTFAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPN DDNRKFVELYNVQRLQSSSIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPKEPVPVAYNAKVPIEFFDFIV IDECHRSIYNLWKQVLDYFDAFLIGLTATPDKRTFGFFNENIVSEYSHERAVADGVNVGYDVYTIETEITRNGSRIRARE FIDKREKLSRRKRWEQLEDDVVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKTDSHADDIIQIIR EEFNEGNAFCNKITYKAEDDPKSLLARFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVRSSNYFEQMKGRGTRTLSF DDLKKVTPSVTSAKTHFVIIDAVGVTKSLKTDSRPLERKPTASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITEQER AAFIDKTGGKSINQVVRELLDSWDPDSINRKAREMNPEAVQEMGESPSGETTMFLEQAQQALLHEARLTFNGSLNEFIDT VRRVHEQIIDTVNLDQVTRSEWAAESGEKAAELIGEFKAYLEAHKDEITALGIFYNQPYRRRELTFRMIREVLDRLKADR PMLAPMRIWHAYEQIEKVNGSSPKNELIALVALIRRVTGIDPVLTVYDRTVDANFKQWVFSRHSDAGDKFTEEQMNWLRM IKEHIASSIHMEQDDLDLTPFDAYGGRGRMWQLFGDRMDGIIDELNEALTV
Sequences:
>Translated_931_residues MQERYSLNQTPEQIARDVIDVQLRLAGWAVQEKNRIDWQVSSGIAVRHYPTQDGLEADYVLFVDRRPVGVIEAKKEDEGH HLTVVEEQSFGYAESKLKHLNNDPLPFVYESTGTLTRFTDYRDPKPRSRPVFTFHRPETFREWLGQERSLRERLYDIPGL NPAALRECQTMAINNLESSFRDGRPRALIQMATGSGKTFAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPN DDNRKFVELYNVQRLQSSSIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPKEPVPVAYNAKVPIEFFDFIV IDECHRSIYNLWKQVLDYFDAFLIGLTATPDKRTFGFFNENIVSEYSHERAVADGVNVGYDVYTIETEITRNGSRIRARE FIDKREKLSRRKRWEQLEDDVVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKTDSHADDIIQIIR EEFNEGNAFCNKITYKAEDDPKSLLARFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVRSSNYFEQMKGRGTRTLSF DDLKKVTPSVTSAKTHFVIIDAVGVTKSLKTDSRPLERKPTASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITEQER AAFIDKTGGKSINQVVRELLDSWDPDSINRKAREMNPEAVQEMGESPSGETTMFLEQAQQALLHEARLTFNGSLNEFIDT VRRVHEQIIDTVNLDQVTRSEWAAESGEKAAELIGEFKAYLEAHKDEITALGIFYNQPYRRRELTFRMIREVLDRLKADR PMLAPMRIWHAYEQIEKVNGSSPKNELIALVALIRRVTGIDPVLTVYDRTVDANFKQWVFSRHSDAGDKFTEEQMNWLRM IKEHIASSIHMEQDDLDLTPFDAYGGRGRMWQLFGDRMDGIIDELNEALTV >Mature_931_residues MQERYSLNQTPEQIARDVIDVQLRLAGWAVQEKNRIDWQVSSGIAVRHYPTQDGLEADYVLFVDRRPVGVIEAKKEDEGH HLTVVEEQSFGYAESKLKHLNNDPLPFVYESTGTLTRFTDYRDPKPRSRPVFTFHRPETFREWLGQERSLRERLYDIPGL NPAALRECQTMAINNLESSFRDGRPRALIQMATGSGKTFAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPN DDNRKFVELYNVQRLQSSSIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPKEPVPVAYNAKVPIEFFDFIV IDECHRSIYNLWKQVLDYFDAFLIGLTATPDKRTFGFFNENIVSEYSHERAVADGVNVGYDVYTIETEITRNGSRIRARE FIDKREKLSRRKRWEQLEDDVVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKTDSHADDIIQIIR EEFNEGNAFCNKITYKAEDDPKSLLARFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVRSSNYFEQMKGRGTRTLSF DDLKKVTPSVTSAKTHFVIIDAVGVTKSLKTDSRPLERKPTASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITEQER AAFIDKTGGKSINQVVRELLDSWDPDSINRKAREMNPEAVQEMGESPSGETTMFLEQAQQALLHEARLTFNGSLNEFIDT VRRVHEQIIDTVNLDQVTRSEWAAESGEKAAELIGEFKAYLEAHKDEITALGIFYNQPYRRRELTFRMIREVLDRLKADR PMLAPMRIWHAYEQIEKVNGSSPKNELIALVALIRRVTGIDPVLTVYDRTVDANFKQWVFSRHSDAGDKFTEEQMNWLRM IKEHIASSIHMEQDDLDLTPFDAYGGRGRMWQLFGDRMDGIIDELNEALTV
Specific function: The EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=1025, Percent_Identity=26.2439024390244, Blast_Score=238, Evalue=2e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR021943 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR007409 [H]
Pfam domain/function: PF12082 DUF3559; PF00271 Helicase_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 107234; Mature: 107234
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQERYSLNQTPEQIARDVIDVQLRLAGWAVQEKNRIDWQVSSGIAVRHYPTQDGLEADYV CCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCEEEEECCCCCCCCCCEE LFVDRRPVGVIEAKKEDEGHHLTVVEEQSFGYAESKLKHLNNDPLPFVYESTGTLTRFTD EEECCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCCEEEECC YRDPKPRSRPVFTFHRPETFREWLGQERSLRERLYDIPGLNPAALRECQTMAINNLESSF CCCCCCCCCCEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH RDGRPRALIQMATGSGKTFAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPN CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCC DDNRKFVELYNVQRLQSSSIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPK CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC EPVPVAYNAKVPIEFFDFIVIDECHRSIYNLWKQVLDYFDAFLIGLTATPDKRTFGFFNE CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH NIVSEYSHERAVADGVNVGYDVYTIETEITRNGSRIRAREFIDKREKLSRRKRWEQLEDD HHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKTDSHADDIIQIIR HEECHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCHHHHHHHHH EEFNEGNAFCNKITYKAEDDPKSLLARFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRD HHHCCCCHHHHHEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHH VRSSNYFEQMKGRGTRTLSFDDLKKVTPSVTSAKTHFVIIDAVGVTKSLKTDSRPLERKP HHCCHHHHHHCCCCCCEECHHHHHHHCCCCCCCCEEEEEEEECCCCHHHCCCCCCCCCCC TASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITEQERAAFIDKTGGKSINQVVRELL CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH DSWDPDSINRKAREMNPEAVQEMGESPSGETTMFLEQAQQALLHEARLTFNGSLNEFIDT HCCCCCHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHH VRRVHEQIIDTVNLDQVTRSEWAAESGEKAAELIGEFKAYLEAHKDEITALGIFYNQPYR HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHH RRELTFRMIREVLDRLKADRPMLAPMRIWHAYEQIEKVNGSSPKNELIALVALIRRVTGI HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC DPVLTVYDRTVDANFKQWVFSRHSDAGDKFTEEQMNWLRMIKEHIASSIHMEQDDLDLTP CHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC FDAYGGRGRMWQLFGDRMDGIIDELNEALTV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQERYSLNQTPEQIARDVIDVQLRLAGWAVQEKNRIDWQVSSGIAVRHYPTQDGLEADYV CCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCEEEEECCCCCCCCCCEE LFVDRRPVGVIEAKKEDEGHHLTVVEEQSFGYAESKLKHLNNDPLPFVYESTGTLTRFTD EEECCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCCEEEECC YRDPKPRSRPVFTFHRPETFREWLGQERSLRERLYDIPGLNPAALRECQTMAINNLESSF CCCCCCCCCCEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH RDGRPRALIQMATGSGKTFAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPN CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCC DDNRKFVELYNVQRLQSSSIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPK CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC EPVPVAYNAKVPIEFFDFIVIDECHRSIYNLWKQVLDYFDAFLIGLTATPDKRTFGFFNE CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH NIVSEYSHERAVADGVNVGYDVYTIETEITRNGSRIRAREFIDKREKLSRRKRWEQLEDD HHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKTDSHADDIIQIIR HEECHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCHHHHHHHHH EEFNEGNAFCNKITYKAEDDPKSLLARFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRD HHHCCCCHHHHHEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHH VRSSNYFEQMKGRGTRTLSFDDLKKVTPSVTSAKTHFVIIDAVGVTKSLKTDSRPLERKP HHCCHHHHHHCCCCCCEECHHHHHHHCCCCCCCCEEEEEEEECCCCHHHCCCCCCCCCCC TASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITEQERAAFIDKTGGKSINQVVRELL CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH DSWDPDSINRKAREMNPEAVQEMGESPSGETTMFLEQAQQALLHEARLTFNGSLNEFIDT HCCCCCHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHH VRRVHEQIIDTVNLDQVTRSEWAAESGEKAAELIGEFKAYLEAHKDEITALGIFYNQPYR HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHH RRELTFRMIREVLDRLKADRPMLAPMRIWHAYEQIEKVNGSSPKNELIALVALIRRVTGI HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC DPVLTVYDRTVDANFKQWVFSRHSDAGDKFTEEQMNWLRMIKEHIASSIHMEQDDLDLTP CHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC FDAYGGRGRMWQLFGDRMDGIIDELNEALTV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3323532; 7610040; 9278503; 1650347 [H]