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The map label for this gene is ykfC [H]

Identifier: 119357291

GI number: 119357291

Start: 1684063

End: 1684833

Strand: Reverse

Name: ykfC [H]

Synonym: Cpha266_1485

Alternate gene names: 119357291

Gene position: 1684833-1684063 (Counterclockwise)

Preceding gene: 119357292

Following gene: 119357290

Centisome position: 53.76

GC content: 52.14

Gene sequence:

>771_bases
ATGATGTACGGTAAGGAGAAGTCAGACCTGCTGATAGTACCTGAGAAGCAGGCGAACAATGCGGGAAATCCTGCGGCGGA
GTCTGTGGAGGGAAGCGGTGGGAACAAGAGGAATGCGGAAGAGCAAAACACGGTCCGGACGCAGAGTCGGGGTTCCGTGT
CCCAAGCGCAGGCCCGCATACGCGAAGCGGTAACCAGAAATCGAGGGGAGAAGCTAACAGCGCTTTTGCATCATGTCACG
ATAGACAGCCTGCGATGGTCGTTTTACCAATTGAGGAAGAACGCCGCAACAGGTATAGATGGAGTGATATGGAAGGATTA
CGAGGTAGGACTGGAGGACAAACTTGCAGACCTGAACCGACGAGTCCATACTGGAGCGTACCGGGCACAGCCATCACGCC
GGAAGTACATACCAAAGGCGGATGGTAAACAGCGACCGCTCAGCATAGCTGCGCTGGAAGACAAGATTGTTCAGCGAGCA
GTGGTGGCGATCCTCACGCCGATCTACGAAGCGGATTTTTTGGGGTTTAGCTATGGATTCCGACCGGGGCGCAGCCAGCA
CAATGCACTGGACGCACTGGCCTATGGAATCAAGGTGAAGAAAATCTGCTGGATTTTAGATGCCGATATTTCCCGGTTTT
TTGACACAATCAGTCATGAATGGCTGATTCGATTTATCGAACACCGGATTGGTGACAAACGTATCGTCCGATTGATTATC
AAGTGTACGTGGAGGAGGGGACGCTCACAACTACGTAAACTAATGCGATAA

Upstream 100 bases:

>100_bases
CCTGGCATGTACGTACATCTTCTGCACGGGAACCGGGAGATCTCCAACACCACCCGTCGTCGTTGGCGGGTCGCATCGGG
AAGGCCAAAGGCCGAAGCCG

Downstream 100 bases:

>100_bases
AATTCTTACTTTTCAGAAACAACGCCAAGTCTCAGACAGGAAGGAACCCATAACAACGAACACCAATGCCGAGAGGAGCA
AGACTGGACTCGCCGGGTAC

Product: putative reverse transcriptase/maturase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MMYGKEKSDLLIVPEKQANNAGNPAAESVEGSGGNKRNAEEQNTVRTQSRGSVSQAQARIREAVTRNRGEKLTALLHHVT
IDSLRWSFYQLRKNAATGIDGVIWKDYEVGLEDKLADLNRRVHTGAYRAQPSRRKYIPKADGKQRPLSIAALEDKIVQRA
VVAILTPIYEADFLGFSYGFRPGRSQHNALDALAYGIKVKKICWILDADISRFFDTISHEWLIRFIEHRIGDKRIVRLII
KCTWRRGRSQLRKLMR

Sequences:

>Translated_256_residues
MMYGKEKSDLLIVPEKQANNAGNPAAESVEGSGGNKRNAEEQNTVRTQSRGSVSQAQARIREAVTRNRGEKLTALLHHVT
IDSLRWSFYQLRKNAATGIDGVIWKDYEVGLEDKLADLNRRVHTGAYRAQPSRRKYIPKADGKQRPLSIAALEDKIVQRA
VVAILTPIYEADFLGFSYGFRPGRSQHNALDALAYGIKVKKICWILDADISRFFDTISHEWLIRFIEHRIGDKRIVRLII
KCTWRRGRSQLRKLMR
>Mature_256_residues
MMYGKEKSDLLIVPEKQANNAGNPAAESVEGSGGNKRNAEEQNTVRTQSRGSVSQAQARIREAVTRNRGEKLTALLHHVT
IDSLRWSFYQLRKNAATGIDGVIWKDYEVGLEDKLADLNRRVHTGAYRAQPSRRKYIPKADGKQRPLSIAALEDKIVQRA
VVAILTPIYEADFLGFSYGFRPGRSQHNALDALAYGIKVKKICWILDADISRFFDTISHEWLIRFIEHRIGDKRIVRLII
KCTWRRGRSQLRKLMR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=128, Percent_Identity=35.9375, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6226520, Length=131, Percent_Identity=32.824427480916, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 29228; Mature: 29228

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYGKEKSDLLIVPEKQANNAGNPAAESVEGSGGNKRNAEEQNTVRTQSRGSVSQAQARI
CCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
REAVTRNRGEKLTALLHHVTIDSLRWSFYQLRKNAATGIDGVIWKDYEVGLEDKLADLNR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHCCHHHHHHHHHH
RVHTGAYRAQPSRRKYIPKADGKQRPLSIAALEDKIVQRAVVAILTPIYEADFLGFSYGF
HHHCCHHHCCCCHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RPGRSQHNALDALAYGIKVKKICWILDADISRFFDTISHEWLIRFIEHRIGDKRIVRLII
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KCTWRRGRSQLRKLMR
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMYGKEKSDLLIVPEKQANNAGNPAAESVEGSGGNKRNAEEQNTVRTQSRGSVSQAQARI
CCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
REAVTRNRGEKLTALLHHVTIDSLRWSFYQLRKNAATGIDGVIWKDYEVGLEDKLADLNR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHCCHHHHHHHHHH
RVHTGAYRAQPSRRKYIPKADGKQRPLSIAALEDKIVQRAVVAILTPIYEADFLGFSYGF
HHHCCHHHCCCCHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RPGRSQHNALDALAYGIKVKKICWILDADISRFFDTISHEWLIRFIEHRIGDKRIVRLII
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
KCTWRRGRSQLRKLMR
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]