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The map label for this gene is ykfC [H]

Identifier: 119357287

GI number: 119357287

Start: 1678623

End: 1679879

Strand: Reverse

Name: ykfC [H]

Synonym: Cpha266_1481

Alternate gene names: 119357287

Gene position: 1679879-1678623 (Counterclockwise)

Preceding gene: 119357290

Following gene: 119357283

Centisome position: 53.6

GC content: 51.39

Gene sequence:

>1257_bases
ATGACAAAGCCTTATGAGATTTCCAAACACCTCGTTCTGGAATCATACAGAACGGTCAAAGCAAACAGAGGAGGTGCCGG
AGTAGATCAGGAATCGATCGAAGCCTTCGAGAAGAATCTGAAAGGCAATTTGTACAAGCTCTGGAATCGTCTCAGCTCCG
GGAGCTATTTCCCGCCGCCAGTCAAAGGGGTAGGCATACCCAAGAAAACCGGCGGCATACGGATGCTGGGCGTACCAACA
GTAGCGGATCGGGTTGCCCAGACGGTAGGCAAGGAGACGCTTGAGCCTCTGCTGGAACCGATCTTTCACCAGGACTCATA
CGGGTACAGACCAGGCCGAAGTGCGCTGGATGCCGTGGGAGTGGTGAGAGAGCGGTGCTGGAAGTATGATTGGGTAGTCG
AGTTTGATATCAGCAAGTTCTTTGACACGATGAATCATGAGCTGTTGATGCGAGCAGTAAGGAAGCACTGCCAGATCGAA
TGGGTGTTGCTCTATGTCGAGCGCTGGCTGAAAGCGCCGATGATGAGCCCGGAAGGAGATCTGGTAGAGCGGACAAAGGG
AACACCGCAAGGCGGGGTAATAAGCCCACTGTTAGCGAATCTGTTTCTGCACTATGCCTTTGACCGGTGGGTCAGCGAAA
ATCTTCCCGGTGTGCCGTTCTGTCGGTATGCCGACGATGGGGTGCTGCACTGTAAAAGCAAAGAGCAGGCGGTGCTGGTC
ATGAAAAAGATAACGAAAAGGTTTGAAGCGTGCGGATTGCGAGTAAACCCGGACAAAACACGGATCGTCTATTGCAAGGA
TGACAAACGAAAGGAAGATCATCCGGTAACGAGCTTTACGTTTTTAGGCTATACCTTTCGACCACGACAGGTGAAGGATA
AACATGGCCGAATATTCGTGGGGTTCACACCGGCGGTGAGTTCGGGATCGCTGAAAACGATGCGAAGAACCATAAGAAGC
TGGCATCTGCAATTGAAAAGCGATAAGCAGATTGAGGAACTATCAAAAGCGATCGACCCGGTACTGAGGGGGTGGAAGAA
CTACTTCTGTCGATTCAACGCCTCGGCAATGAAACCGGTATGGCATCATGTCAATCTGTATCTGACAAGGTGGCTGATGC
GGAAATACCAAAAGTATGCAGGTCGTCTCAAACGCGCAGTCGGTGTGCTTGAACGGATAGCGAGAGCAAAGCCTTCAGCG
TTTGTGCATTGGAAATTGGGGTGCATTCCCAAAGGCTGGATAATGGGAGCCGGATGA

Upstream 100 bases:

>100_bases
GTAGTAGCGATGAAGGTTCTGTAATGGAACTGGAGCGAAGGGATTGCATTATCCGGTCATTGGAGTTGGTCAACTGTGCA
AGCAGGAGGAGCTGTCTGCA

Downstream 100 bases:

>100_bases
GCGGAGACGTTCACGTCCGGTTCTGCGAGAGGCTGGGGGTGAAATTCCCCCGGCCTACTTACCCCTTCTTCTCGCGTTTG
TGCATTGGAAATTGGGGTAC

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTKPYEISKHLVLESYRTVKANRGGAGVDQESIEAFEKNLKGNLYKLWNRLSSGSYFPPPVKGVGIPKKTGGIRMLGVPT
VADRVAQTVGKETLEPLLEPIFHQDSYGYRPGRSALDAVGVVRERCWKYDWVVEFDISKFFDTMNHELLMRAVRKHCQIE
WVLLYVERWLKAPMMSPEGDLVERTKGTPQGGVISPLLANLFLHYAFDRWVSENLPGVPFCRYADDGVLHCKSKEQAVLV
MKKITKRFEACGLRVNPDKTRIVYCKDDKRKEDHPVTSFTFLGYTFRPRQVKDKHGRIFVGFTPAVSSGSLKTMRRTIRS
WHLQLKSDKQIEELSKAIDPVLRGWKNYFCRFNASAMKPVWHHVNLYLTRWLMRKYQKYAGRLKRAVGVLERIARAKPSA
FVHWKLGCIPKGWIMGAG

Sequences:

>Translated_418_residues
MTKPYEISKHLVLESYRTVKANRGGAGVDQESIEAFEKNLKGNLYKLWNRLSSGSYFPPPVKGVGIPKKTGGIRMLGVPT
VADRVAQTVGKETLEPLLEPIFHQDSYGYRPGRSALDAVGVVRERCWKYDWVVEFDISKFFDTMNHELLMRAVRKHCQIE
WVLLYVERWLKAPMMSPEGDLVERTKGTPQGGVISPLLANLFLHYAFDRWVSENLPGVPFCRYADDGVLHCKSKEQAVLV
MKKITKRFEACGLRVNPDKTRIVYCKDDKRKEDHPVTSFTFLGYTFRPRQVKDKHGRIFVGFTPAVSSGSLKTMRRTIRS
WHLQLKSDKQIEELSKAIDPVLRGWKNYFCRFNASAMKPVWHHVNLYLTRWLMRKYQKYAGRLKRAVGVLERIARAKPSA
FVHWKLGCIPKGWIMGAG
>Mature_417_residues
TKPYEISKHLVLESYRTVKANRGGAGVDQESIEAFEKNLKGNLYKLWNRLSSGSYFPPPVKGVGIPKKTGGIRMLGVPTV
ADRVAQTVGKETLEPLLEPIFHQDSYGYRPGRSALDAVGVVRERCWKYDWVVEFDISKFFDTMNHELLMRAVRKHCQIEW
VLLYVERWLKAPMMSPEGDLVERTKGTPQGGVISPLLANLFLHYAFDRWVSENLPGVPFCRYADDGVLHCKSKEQAVLVM
KKITKRFEACGLRVNPDKTRIVYCKDDKRKEDHPVTSFTFLGYTFRPRQVKDKHGRIFVGFTPAVSSGSLKTMRRTIRSW
HLQLKSDKQIEELSKAIDPVLRGWKNYFCRFNASAMKPVWHHVNLYLTRWLMRKYQKYAGRLKRAVGVLERIARAKPSAF
VHWKLGCIPKGWIMGAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=205, Percent_Identity=27.3170731707317, Blast_Score=96, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6226521, Length=193, Percent_Identity=27.4611398963731, Blast_Score=93, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 48081; Mature: 47949

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPYEISKHLVLESYRTVKANRGGAGVDQESIEAFEKNLKGNLYKLWNRLSSGSYFPPP
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
VKGVGIPKKTGGIRMLGVPTVADRVAQTVGKETLEPLLEPIFHQDSYGYRPGRSALDAVG
CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
VVRERCWKYDWVVEFDISKFFDTMNHELLMRAVRKHCQIEWVLLYVERWLKAPMMSPEGD
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
LVERTKGTPQGGVISPLLANLFLHYAFDRWVSENLPGVPFCRYADDGVLHCKSKEQAVLV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCHHHHH
MKKITKRFEACGLRVNPDKTRIVYCKDDKRKEDHPVTSFTFLGYTFRPRQVKDKHGRIFV
HHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCCCCCEEEEECEEECCCCCCCCCCEEEE
GFTPAVSSGSLKTMRRTIRSWHLQLKSDKQIEELSKAIDPVLRGWKNYFCRFNASAMKPV
EECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHH
WHHVNLYLTRWLMRKYQKYAGRLKRAVGVLERIARAKPSAFVHWKLGCIPKGWIMGAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEECCC
>Mature Secondary Structure 
TKPYEISKHLVLESYRTVKANRGGAGVDQESIEAFEKNLKGNLYKLWNRLSSGSYFPPP
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
VKGVGIPKKTGGIRMLGVPTVADRVAQTVGKETLEPLLEPIFHQDSYGYRPGRSALDAVG
CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
VVRERCWKYDWVVEFDISKFFDTMNHELLMRAVRKHCQIEWVLLYVERWLKAPMMSPEGD
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
LVERTKGTPQGGVISPLLANLFLHYAFDRWVSENLPGVPFCRYADDGVLHCKSKEQAVLV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCHHHHH
MKKITKRFEACGLRVNPDKTRIVYCKDDKRKEDHPVTSFTFLGYTFRPRQVKDKHGRIFV
HHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCCCCCEEEEECEEECCCCCCCCCCEEEE
GFTPAVSSGSLKTMRRTIRSWHLQLKSDKQIEELSKAIDPVLRGWKNYFCRFNASAMKPV
EECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHH
WHHVNLYLTRWLMRKYQKYAGRLKRAVGVLERIARAKPSAFVHWKLGCIPKGWIMGAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]