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The map label for this gene is recD [H]

Identifier: 119357209

GI number: 119357209

Start: 1590428

End: 1592173

Strand: Reverse

Name: recD [H]

Synonym: Cpha266_1400

Alternate gene names: 119357209

Gene position: 1592173-1590428 (Counterclockwise)

Preceding gene: 119357210

Following gene: 119357208

Centisome position: 50.8

GC content: 63.4

Gene sequence:

>1746_bases
ATGAGCATTGAGTTTTGCCAGCGATCCATAGACCGCCAGATAGCGGAATATCTCTGCCGTGGAGCAAGGGACGAACCGGG
AGTGTTGGTGCGCTCGGTAGTTTCGCTGCTCAGCCAGGCGGTAGGGCAGGGGCACGTCTGCCTCGACCTCGAAGAGATTG
CCGGAGAGGTTGTGCGGATTCCGGGCCGGGAGGAACCGCTGCGCCTGCCGGGTATCGTAAACCTGCTCGCAGCGCTCCGT
TCGCTGCCAACAGTCGGCAGGCCGGGTGAGCATCGCCCGCTGATCCTCGACGAAGCCGGACGGCTCTACCTTTATCGTTA
CTTCCGCTACGAACTCCAGCTTGCCGAAGCCATTCGCGCCCGTGCTGCAATGGAGACTGGCAGCCCCGACGAAGCCGCGC
TTGCCGAACAGCTCGACCGCTACTTCGTCCCCGATGAATCGGGAGAGGATCGCCAACGTCAGGCCGCTCTCACGGCGCTC
CGGAGAGGCTTCTCGGTCATCTCCGGCGGCCCCGGTACCGGCAAGACCACCACCGTGGTGCGCATTCTCGGACTTCTGCT
GGAACAGACAGGCGGAGAGCGGATGCGCATCGCCATGGCCGCGCCAACGGGAAAGGCCGCCGCACGGCTTGCCTCCTCTA
TCGCTTCGCTCCGGGAGTCGTTGCCCTGTACCGAAGAGGTGAAGCACACCGTCCCCAGCCAGGTCACCACCATCCACCGG
CTGCTCGGCACCATCCCCAATTCGACCGGGTTCCGGCATAACGCCCGGAATCCGCTCCCGTACGACGCCGTCATCGTCGA
TGAAGCCTCGATGGTCGATCTGCCGCTCATGACCGCCCTCGTCACGGCGCTCATGCCGCAGGCCCGTCTCATCCTCATCG
GCGACCGCGACCAGCTCGCCTCCGTCGAAGCCGGAGCCGTGCTCGGCGACATCTGTCGTGCCGCAGAATCTCCCGGCTCC
GCAGTTTCTTCCATCAAAGGGTGCGTCACCGTGCTCGACCGCAACTACCGCTTCGGCGACGGTTCCGGTATCGCAGCCCT
CAGCCGGGCCATCAACAGCGGAGACGCCGGCGAAGCCATTCGTCTTCTTGGCGACCCGGCCGACAGCACCATCTCGCTCG
AAGCCACACCGATGCGTGAAGCCGTCAGGAAGCGCCTCGCAAGCCCGGTGCTTGAAGGCTTCCGCCCCTATCTCGAAGCA
GAAGCGCCGGAAGATGCCCTGCGCCTTTTCGAGCGCTTCCGCATACTCACCGCACTCCGCGAAGGCCCCTGGGGAGCCGC
AGGCATGAACCACGCCGTCGAAACCCTGCTCCACGAAGCGGGACTCCTCAAGGCCGACACCCCGTTCTACCGGGGCAGAC
CGGTTCTCGTCACCGAAAACGACTACATCCACAAACTCTTTAACGGCGACACCGGCATCATCCTCCCCGACCCGGAAACC
GGCAACCAGAAAGCATATTTCGCCGCCCCCGACGGCACCGTCCGCTCCATCCCCCCGGAGTTCCTCCCGGCGCACGTAAC
CGCTTTCGCCATGACCGTGCACAAAAGCCAGGGTTCGGAGTTCGACAGGGTGCTCATGGTTCTGCCGCCTGAGGATACGC
TTCTTCTGACGAGAGAACTGATCTATACAGGTATTACGAGAGCACGGCAGGCCATTACGCTCTGGAGCGATGAAGCTGTT
TTCAGCGCAGCGGTAAAGCGCAGAACGGAGCGGAGAAGCGGGTTGAGGGAGAGGCTTGTTTTATAG

Upstream 100 bases:

>100_bases
GGGGCGAGGAGTACGGCTTCTTCCGCGACCTGCCTCCGGAAGCGCTGATCCGCGAGCTGCAGGAGCTGCTGATCGAAACG
GAAACAGGGGAGAGCGAAGC

Downstream 100 bases:

>100_bases
AGTTATATGGACTGCATTTCGCAGCTTTTTTCTTGCCGTGCTTTGGCGGTAATCGTATATTTCCTTTCAGCAAAAGGAGT
TATTTCTTCGCAACCGAGAC

Product: DNA helicase/exodeoxyribonuclease V, alpha subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 581; Mature: 580

Protein sequence:

>581_residues
MSIEFCQRSIDRQIAEYLCRGARDEPGVLVRSVVSLLSQAVGQGHVCLDLEEIAGEVVRIPGREEPLRLPGIVNLLAALR
SLPTVGRPGEHRPLILDEAGRLYLYRYFRYELQLAEAIRARAAMETGSPDEAALAEQLDRYFVPDESGEDRQRQAALTAL
RRGFSVISGGPGTGKTTTVVRILGLLLEQTGGERMRIAMAAPTGKAAARLASSIASLRESLPCTEEVKHTVPSQVTTIHR
LLGTIPNSTGFRHNARNPLPYDAVIVDEASMVDLPLMTALVTALMPQARLILIGDRDQLASVEAGAVLGDICRAAESPGS
AVSSIKGCVTVLDRNYRFGDGSGIAALSRAINSGDAGEAIRLLGDPADSTISLEATPMREAVRKRLASPVLEGFRPYLEA
EAPEDALRLFERFRILTALREGPWGAAGMNHAVETLLHEAGLLKADTPFYRGRPVLVTENDYIHKLFNGDTGIILPDPET
GNQKAYFAAPDGTVRSIPPEFLPAHVTAFAMTVHKSQGSEFDRVLMVLPPEDTLLLTRELIYTGITRARQAITLWSDEAV
FSAAVKRRTERRSGLRERLVL

Sequences:

>Translated_581_residues
MSIEFCQRSIDRQIAEYLCRGARDEPGVLVRSVVSLLSQAVGQGHVCLDLEEIAGEVVRIPGREEPLRLPGIVNLLAALR
SLPTVGRPGEHRPLILDEAGRLYLYRYFRYELQLAEAIRARAAMETGSPDEAALAEQLDRYFVPDESGEDRQRQAALTAL
RRGFSVISGGPGTGKTTTVVRILGLLLEQTGGERMRIAMAAPTGKAAARLASSIASLRESLPCTEEVKHTVPSQVTTIHR
LLGTIPNSTGFRHNARNPLPYDAVIVDEASMVDLPLMTALVTALMPQARLILIGDRDQLASVEAGAVLGDICRAAESPGS
AVSSIKGCVTVLDRNYRFGDGSGIAALSRAINSGDAGEAIRLLGDPADSTISLEATPMREAVRKRLASPVLEGFRPYLEA
EAPEDALRLFERFRILTALREGPWGAAGMNHAVETLLHEAGLLKADTPFYRGRPVLVTENDYIHKLFNGDTGIILPDPET
GNQKAYFAAPDGTVRSIPPEFLPAHVTAFAMTVHKSQGSEFDRVLMVLPPEDTLLLTRELIYTGITRARQAITLWSDEAV
FSAAVKRRTERRSGLRERLVL
>Mature_580_residues
SIEFCQRSIDRQIAEYLCRGARDEPGVLVRSVVSLLSQAVGQGHVCLDLEEIAGEVVRIPGREEPLRLPGIVNLLAALRS
LPTVGRPGEHRPLILDEAGRLYLYRYFRYELQLAEAIRARAAMETGSPDEAALAEQLDRYFVPDESGEDRQRQAALTALR
RGFSVISGGPGTGKTTTVVRILGLLLEQTGGERMRIAMAAPTGKAAARLASSIASLRESLPCTEEVKHTVPSQVTTIHRL
LGTIPNSTGFRHNARNPLPYDAVIVDEASMVDLPLMTALVTALMPQARLILIGDRDQLASVEAGAVLGDICRAAESPGSA
VSSIKGCVTVLDRNYRFGDGSGIAALSRAINSGDAGEAIRLLGDPADSTISLEATPMREAVRKRLASPVLEGFRPYLEAE
APEDALRLFERFRILTALREGPWGAAGMNHAVETLLHEAGLLKADTPFYRGRPVLVTENDYIHKLFNGDTGIILPDPETG
NQKAYFAAPDGTVRSIPPEFLPAHVTAFAMTVHKSQGSEFDRVLMVLPPEDTLLLTRELIYTGITRARQAITLWSDEAVF
SAAVKRRTERRSGLRERLVL

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=598, Percent_Identity=42.1404682274247, Blast_Score=367, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 63218; Mature: 63087

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEFCQRSIDRQIAEYLCRGARDEPGVLVRSVVSLLSQAVGQGHVCLDLEEIAGEVVRI
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHCCCEEEC
PGREEPLRLPGIVNLLAALRSLPTVGRPGEHRPLILDEAGRLYLYRYFRYELQLAEAIRA
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHH
RAAMETGSPDEAALAEQLDRYFVPDESGEDRQRQAALTALRRGFSVISGGPGTGKTTTVV
HHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
RILGLLLEQTGGERMRIAMAAPTGKAAARLASSIASLRESLPCTEEVKHTVPSQVTTIHR
HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH
LLGTIPNSTGFRHNARNPLPYDAVIVDEASMVDLPLMTALVTALMPQARLILIGDRDQLA
HHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
SVEAGAVLGDICRAAESPGSAVSSIKGCVTVLDRNYRFGDGSGIAALSRAINSGDAGEAI
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEE
RLLGDPADSTISLEATPMREAVRKRLASPVLEGFRPYLEAEAPEDALRLFERFRILTALR
EEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
EGPWGAAGMNHAVETLLHEAGLLKADTPFYRGRPVLVTENDYIHKLFNGDTGIILPDPET
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEEEECCCCC
GNQKAYFAAPDGTVRSIPPEFLPAHVTAFAMTVHKSQGSEFDRVLMVLPPEDTLLLTREL
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHH
IYTGITRARQAITLWSDEAVFSAAVKRRTERRSGLRERLVL
HHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIEFCQRSIDRQIAEYLCRGARDEPGVLVRSVVSLLSQAVGQGHVCLDLEEIAGEVVRI
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHCCCEEEC
PGREEPLRLPGIVNLLAALRSLPTVGRPGEHRPLILDEAGRLYLYRYFRYELQLAEAIRA
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHH
RAAMETGSPDEAALAEQLDRYFVPDESGEDRQRQAALTALRRGFSVISGGPGTGKTTTVV
HHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
RILGLLLEQTGGERMRIAMAAPTGKAAARLASSIASLRESLPCTEEVKHTVPSQVTTIHR
HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH
LLGTIPNSTGFRHNARNPLPYDAVIVDEASMVDLPLMTALVTALMPQARLILIGDRDQLA
HHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
SVEAGAVLGDICRAAESPGSAVSSIKGCVTVLDRNYRFGDGSGIAALSRAINSGDAGEAI
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEE
RLLGDPADSTISLEATPMREAVRKRLASPVLEGFRPYLEAEAPEDALRLFERFRILTALR
EEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
EGPWGAAGMNHAVETLLHEAGLLKADTPFYRGRPVLVTENDYIHKLFNGDTGIILPDPET
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEEEECCCCC
GNQKAYFAAPDGTVRSIPPEFLPAHVTAFAMTVHKSQGSEFDRVLMVLPPEDTLLLTREL
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHH
IYTGITRARQAITLWSDEAVFSAAVKRRTERRSGLRERLVL
HHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]