| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357182
Identifier: 119357182
GI number: 119357182
Start: 1569108
End: 1570316
Strand: Reverse
Name: 119357182
Synonym: Cpha266_1373
Alternate gene names: NA
Gene position: 1570316-1569108 (Counterclockwise)
Preceding gene: 119357183
Following gene: 119357181
Centisome position: 50.11
GC content: 33.75
Gene sequence:
>1209_bases ATGTCTTCACAAAAAAGAAGCCCGGATAATTTTATGTCTGAACAAGGCAGGCTATCAGTTGTTTATGATCTTTACATTGA TTTATTGGGCACTTTAGTTCCCGGTCTTATGACGGTAATTCTTGGCGTTGGATTAATATTTTACGCTTTATCTACGATTG ATGCGGTATTGTTTTCCAATAATGAACTGCATGGTCATGTAATCGAAAAAAATAGTACAAAATTAGAAACATTGATTACT CAGTTACATTGGGAATTCTCTACGGTTATTATAGTATCTGCTTATGTCATTGGATCAGTATTTTTTCGTCAAGACCCAAA AGTGCCTGATGCAATAAGTGCTTTGCATATATGGATGAATTCTACTAATAATGACAGAAAAAGACTTGCCGTTCAATCGA CAAAAAAATTATCTGAACTACCGCCTCTTTTTTTGCGTTTTTTCAAAACAGATAACTCATCATTTCGTTTTAGCATTCTT GATAGGTTGCGCCCTAATTTTTTGCGTCTTATCAATAAAGATAAGTCTTCTTTTGGATTTCGTGTGTTTTCATACTTTCA GCCGATCTTCTGGCGACTTAAAAAAAAACACAAGCTTTCACTGAGTTTAAGTATCCTATCCTATATCCGCCCTAAATTGT TTAATGAAACGCTCGGTCTTGATACGCAATTTCCGTATAGTCATCTCAGATGTTATTTGGCTTCCCGTCAATTAATTCAT CTGAGTGAATTGATTCCATGGTGCCCTAATGAAAAAAATACAGAGCAGTTCCGTACAAAAATGTTTATCAATATAATTAA AATACGTTTACTCTCACATTATCAGAATTTGTCAAAAGAACTTATCAGGAATGAGGCTCATGTGCGTTTGGCAACATCAG TCTGGTATGCTGCATCTACTCTTTATTATCTTTCGTTTACAGTTATTATTGCTTTGCTTGGCTGTTATTTTTATAACCCT CATAAGTTAGATATTGCTCCTACAATATTTATGCCTATAGCTTCTGCCGGAATACTGATATTGTTTTATTTGTCTATGAA ATATCATCTTATTAAATGCATTCATTATATGCGGGTTAGAGAGGTTGTATATGTTTTGGAGGCGGCATATATGGTCAAAA TGGTTGATGATAGACTATTTGATGGTTTATTTGATAATAATACTTCCGAAAAATGTGGCAACTGTAAGTTTTGTTTCAAC AATGAATAA
Upstream 100 bases:
>100_bases GATTCTTTATTATTTTCAATAAAAGTAATATTTTGTTGAAATATATTATTTGGATGTAAGTTTCAGTCAAGCCATTTTTT AAAAAAAGGAAGGAGAAAAA
Downstream 100 bases:
>100_bases TTGATTTATTTGAATTTTGGCGATAGCTTCACTCGAAAACATCCGGGGTGAGTAGTCCGAGGGAGTTTCACCCTCAGACT TCTCACTCCGAAGATACGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSSQKRSPDNFMSEQGRLSVVYDLYIDLLGTLVPGLMTVILGVGLIFYALSTIDAVLFSNNELHGHVIEKNSTKLETLIT QLHWEFSTVIIVSAYVIGSVFFRQDPKVPDAISALHIWMNSTNNDRKRLAVQSTKKLSELPPLFLRFFKTDNSSFRFSIL DRLRPNFLRLINKDKSSFGFRVFSYFQPIFWRLKKKHKLSLSLSILSYIRPKLFNETLGLDTQFPYSHLRCYLASRQLIH LSELIPWCPNEKNTEQFRTKMFINIIKIRLLSHYQNLSKELIRNEAHVRLATSVWYAASTLYYLSFTVIIALLGCYFYNP HKLDIAPTIFMPIASAGILILFYLSMKYHLIKCIHYMRVREVVYVLEAAYMVKMVDDRLFDGLFDNNTSEKCGNCKFCFN NE
Sequences:
>Translated_402_residues MSSQKRSPDNFMSEQGRLSVVYDLYIDLLGTLVPGLMTVILGVGLIFYALSTIDAVLFSNNELHGHVIEKNSTKLETLIT QLHWEFSTVIIVSAYVIGSVFFRQDPKVPDAISALHIWMNSTNNDRKRLAVQSTKKLSELPPLFLRFFKTDNSSFRFSIL DRLRPNFLRLINKDKSSFGFRVFSYFQPIFWRLKKKHKLSLSLSILSYIRPKLFNETLGLDTQFPYSHLRCYLASRQLIH LSELIPWCPNEKNTEQFRTKMFINIIKIRLLSHYQNLSKELIRNEAHVRLATSVWYAASTLYYLSFTVIIALLGCYFYNP HKLDIAPTIFMPIASAGILILFYLSMKYHLIKCIHYMRVREVVYVLEAAYMVKMVDDRLFDGLFDNNTSEKCGNCKFCFN NE >Mature_401_residues SSQKRSPDNFMSEQGRLSVVYDLYIDLLGTLVPGLMTVILGVGLIFYALSTIDAVLFSNNELHGHVIEKNSTKLETLITQ LHWEFSTVIIVSAYVIGSVFFRQDPKVPDAISALHIWMNSTNNDRKRLAVQSTKKLSELPPLFLRFFKTDNSSFRFSILD RLRPNFLRLINKDKSSFGFRVFSYFQPIFWRLKKKHKLSLSLSILSYIRPKLFNETLGLDTQFPYSHLRCYLASRQLIHL SELIPWCPNEKNTEQFRTKMFINIIKIRLLSHYQNLSKELIRNEAHVRLATSVWYAASTLYYLSFTVIIALLGCYFYNPH KLDIAPTIFMPIASAGILILFYLSMKYHLIKCIHYMRVREVVYVLEAAYMVKMVDDRLFDGLFDNNTSEKCGNCKFCFNN E
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46811; Mature: 46680
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSQKRSPDNFMSEQGRLSVVYDLYIDLLGTLVPGLMTVILGVGLIFYALSTIDAVLFSN CCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NELHGHVIEKNSTKLETLITQLHWEFSTVIIVSAYVIGSVFFRQDPKVPDAISALHIWMN CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC STNNDRKRLAVQSTKKLSELPPLFLRFFKTDNSSFRFSILDRLRPNFLRLINKDKSSFGF CCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHCCCCHHHHH RVFSYFQPIFWRLKKKHKLSLSLSILSYIRPKLFNETLGLDTQFPYSHLRCYLASRQLIH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LSELIPWCPNEKNTEQFRTKMFINIIKIRLLSHYQNLSKELIRNEAHVRLATSVWYAAST HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH LYYLSFTVIIALLGCYFYNPHKLDIAPTIFMPIASAGILILFYLSMKYHLIKCIHYMRVR HHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVVYVLEAAYMVKMVDDRLFDGLFDNNTSEKCGNCKFCFNNE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCC >Mature Secondary Structure SSQKRSPDNFMSEQGRLSVVYDLYIDLLGTLVPGLMTVILGVGLIFYALSTIDAVLFSN CCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NELHGHVIEKNSTKLETLITQLHWEFSTVIIVSAYVIGSVFFRQDPKVPDAISALHIWMN CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC STNNDRKRLAVQSTKKLSELPPLFLRFFKTDNSSFRFSILDRLRPNFLRLINKDKSSFGF CCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHCCCCHHHHH RVFSYFQPIFWRLKKKHKLSLSLSILSYIRPKLFNETLGLDTQFPYSHLRCYLASRQLIH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LSELIPWCPNEKNTEQFRTKMFINIIKIRLLSHYQNLSKELIRNEAHVRLATSVWYAAST HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH LYYLSFTVIIALLGCYFYNPHKLDIAPTIFMPIASAGILILFYLSMKYHLIKCIHYMRVR HHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVVYVLEAAYMVKMVDDRLFDGLFDNNTSEKCGNCKFCFNNE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA