| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is yugP [H]
Identifier: 119356976
GI number: 119356976
Start: 1306173
End: 1306865
Strand: Reverse
Name: yugP [H]
Synonym: Cpha266_1159
Alternate gene names: 119356976
Gene position: 1306865-1306173 (Counterclockwise)
Preceding gene: 119356980
Following gene: 119356967
Centisome position: 41.7
GC content: 53.54
Gene sequence:
>693_bases ATGTTTTTTGATCCATTATACTTTCTTTTTGCCCTGCCGCCCATGCTTCTTGGTTTGTGGGCTCAGTTCAGGGTTAAATC GGCTTTCAGCAAATACTCTCAGATCAGAACCAACAGCGGCATCAATGGAGCAGAGGCCGCAAAAAGGATTCTTCTGCGCG GCGGCTTGCAGAATGTTACCGTAGAGGCCACCAGAGGGTCTCTTTCCGATCACTACGATCCCCGAAGCAAAACCCTGCGT TTAAGCGAAGAGGTCTATGGGCTTCCAAGCATCGCGGCTGTCGGTGTTGCAGCACACGAAGCCGGTCACGCCCTGCAGGA CAAGGAGGGCTACAAGCCACTCCGGTTACGAGCGGTTATGGTGCCGGCAGTCTCGCTGGGAAGCAATCTCGGGCCGATTA TTTTCATGGCCGGACTCTTTCTTGCAGGAACCATCGGCACAACGCTTGCCTGGGTTGGCATTACCCTTTTTGCCGCAGCC GCGCTCTTTGCGCTCGTTACCCTTCCTGTTGAATTCGATGCAAGCAGACGAGCAAAAGAGCTGCTTGTCTCTCAGGGTAT AGTTTCAAGCGCTGAAATGGAGGGCGTCAATGCCGTTCTTAATGCCGCAGCTCTGACCTATGTTGCTGCCGCAGCGCAGG CTGTCATGCAGCTTCTGTACTTCGTCACCCTGATGAACAGAAGGGATTCGTAA
Upstream 100 bases:
>100_bases ATTTTACTTTTAAGAAACTAATTTTAAAGTTCATATGTTTTTTTGTGATATGATTATTTGAGATAACGATTGATACCATT AACCGAAGCCATACCGTTCC
Downstream 100 bases:
>100_bases AGAGCTCTGTATTCACAAGCAGAAACAGTCTTCGGATCGGAAATCCGTTCCGAAACAGAAAGAGTGAACGCTCCAAAACC AAAAAAACCGGGTACTTGCC
Product: peptidase, membrane zinc metallopeptidase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MFFDPLYFLFALPPMLLGLWAQFRVKSAFSKYSQIRTNSGINGAEAAKRILLRGGLQNVTVEATRGSLSDHYDPRSKTLR LSEEVYGLPSIAAVGVAAHEAGHALQDKEGYKPLRLRAVMVPAVSLGSNLGPIIFMAGLFLAGTIGTTLAWVGITLFAAA ALFALVTLPVEFDASRRAKELLVSQGIVSSAEMEGVNAVLNAAALTYVAAAAQAVMQLLYFVTLMNRRDS
Sequences:
>Translated_230_residues MFFDPLYFLFALPPMLLGLWAQFRVKSAFSKYSQIRTNSGINGAEAAKRILLRGGLQNVTVEATRGSLSDHYDPRSKTLR LSEEVYGLPSIAAVGVAAHEAGHALQDKEGYKPLRLRAVMVPAVSLGSNLGPIIFMAGLFLAGTIGTTLAWVGITLFAAA ALFALVTLPVEFDASRRAKELLVSQGIVSSAEMEGVNAVLNAAALTYVAAAAQAVMQLLYFVTLMNRRDS >Mature_230_residues MFFDPLYFLFALPPMLLGLWAQFRVKSAFSKYSQIRTNSGINGAEAAKRILLRGGLQNVTVEATRGSLSDHYDPRSKTLR LSEEVYGLPSIAAVGVAAHEAGHALQDKEGYKPLRLRAVMVPAVSLGSNLGPIIFMAGLFLAGTIGTTLAWVGITLFAAA ALFALVTLPVEFDASRRAKELLVSQGIVSSAEMEGVNAVLNAAALTYVAAAAQAVMQLLYFVTLMNRRDS
Specific function: Unknown
COG id: COG2738
COG function: function code R; Predicted Zn-dependent protease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007395 [H]
Pfam domain/function: PF04298 Zn_peptidase_2 [H]
EC number: NA
Molecular weight: Translated: 24651; Mature: 24651
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFDPLYFLFALPPMLLGLWAQFRVKSAFSKYSQIRTNSGINGAEAAKRILLRGGLQNVT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEE VEATRGSLSDHYDPRSKTLRLSEEVYGLPSIAAVGVAAHEAGHALQDKEGYKPLRLRAVM EEECCCCCCCCCCCHHHHEEHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH VPAVSLGSNLGPIIFMAGLFLAGTIGTTLAWVGITLFAAAALFALVTLPVEFDASRRAKE HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH LLVSQGIVSSAEMEGVNAVLNAAALTYVAAAAQAVMQLLYFVTLMNRRDS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFFDPLYFLFALPPMLLGLWAQFRVKSAFSKYSQIRTNSGINGAEAAKRILLRGGLQNVT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEE VEATRGSLSDHYDPRSKTLRLSEEVYGLPSIAAVGVAAHEAGHALQDKEGYKPLRLRAVM EEECCCCCCCCCCCHHHHEEHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH VPAVSLGSNLGPIIFMAGLFLAGTIGTTLAWVGITLFAAAALFALVTLPVEFDASRRAKE HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH LLVSQGIVSSAEMEGVNAVLNAAALTYVAAAAQAVMQLLYFVTLMNRRDS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]