Click here to switch to the map view.

The map label for this gene is sodB [H]

Identifier: 119356810

GI number: 119356810

Start: 1124067

End: 1124669

Strand: Reverse

Name: sodB [H]

Synonym: Cpha266_0983

Alternate gene names: 119356810

Gene position: 1124669-1124067 (Counterclockwise)

Preceding gene: 119356813

Following gene: 119356808

Centisome position: 35.89

GC content: 47.76

Gene sequence:

>603_bases
ATGGCTTATCAGCAACCACCGCTTCCCTATGCCGACAATGCACTGGAGCCCTATATTTCTGCAACGACCATTGGTTTTCA
TTACGGAAAACATCATGCGACCTATATAACAAACTACAACAATCTTGTAGCAAACACTCCGCTTGACGCGATGACGATTG
AAGAAGTCATCATTGCAACAGCAAATGACCCGCAGAAAATCGGCATTTTCAACAATGGAGCACAAGCATGGAACCACTCT
TTTTACTGGAACAGCCTCTCTCCTGACGGCGGAGGTGAACCCGGGGGCATCCTTGCTGAAAAAATCAATACCGATCTCGG
TGGATTCGACAAATTCCGCGAAGAACTGAAAAATGCAGCCACAACCCAGTTCGGCAGTGGATGGGCATGGCTGGTTCTTG
ACAATGGAGTCCTGAAGATTGTTAAAACAGCCAACGCCGGAACTCCCCTGACAAGTGGCCAGACACCGCTTCTTGCTGTT
GATGTCTGGGAACACGCCTACTATCTTGATTACCAAAACCGGAGACCGGACTACGTATCAACAACTATTGAACACCTGCT
CAACTGGGAGTTCGCCGAAAAAAACTTTCTGGCCGCAAAATAA

Upstream 100 bases:

>100_bases
AATTTTTCAGACTGAGAGAAACTATAAACCTTAATCAAAAGTTTAAAGCATTATTCTTACAAGCAACAAGGCTTTCCTGT
AACCCAAACCATCACCACTC

Downstream 100 bases:

>100_bases
ACAGCACCGGTATCAAAGATCATCGTAACTCCCCCCGCAAACGGTCAGTTCACAACAACAGCCCCGTCAGAACAGACGGG
GCTGTTTCATACGGTTATCA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAYQQPPLPYADNALEPYISATTIGFHYGKHHATYITNYNNLVANTPLDAMTIEEVIIATANDPQKIGIFNNGAQAWNHS
FYWNSLSPDGGGEPGGILAEKINTDLGGFDKFREELKNAATTQFGSGWAWLVLDNGVLKIVKTANAGTPLTSGQTPLLAV
DVWEHAYYLDYQNRRPDYVSTTIEHLLNWEFAEKNFLAAK

Sequences:

>Translated_200_residues
MAYQQPPLPYADNALEPYISATTIGFHYGKHHATYITNYNNLVANTPLDAMTIEEVIIATANDPQKIGIFNNGAQAWNHS
FYWNSLSPDGGGEPGGILAEKINTDLGGFDKFREELKNAATTQFGSGWAWLVLDNGVLKIVKTANAGTPLTSGQTPLLAV
DVWEHAYYLDYQNRRPDYVSTTIEHLLNWEFAEKNFLAAK
>Mature_199_residues
AYQQPPLPYADNALEPYISATTIGFHYGKHHATYITNYNNLVANTPLDAMTIEEVIIATANDPQKIGIFNNGAQAWNHSF
YWNSLSPDGGGEPGGILAEKINTDLGGFDKFREELKNAATTQFGSGWAWLVLDNGVLKIVKTANAGTPLTSGQTPLLAVD
VWEHAYYLDYQNRRPDYVSTTIEHLLNWEFAEKNFLAAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=43.7185929648241, Blast_Score=152, Evalue=1e-37,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=43.7185929648241, Blast_Score=152, Evalue=1e-37,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=36.6834170854271, Blast_Score=109, Evalue=1e-24,
Organism=Escherichia coli, GI1787946, Length=202, Percent_Identity=53.4653465346535, Blast_Score=221, Evalue=2e-59,
Organism=Escherichia coli, GI1790342, Length=209, Percent_Identity=41.6267942583732, Blast_Score=152, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=39.1959798994975, Blast_Score=126, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=38.5786802030457, Blast_Score=123, Evalue=6e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=38.8349514563107, Blast_Score=115, Evalue=6e-27,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=34.6534653465347, Blast_Score=105, Evalue=2e-23,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22183; Mature: 22052

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQQPPLPYADNALEPYISATTIGFHYGKHHATYITNYNNLVANTPLDAMTIEEVIIAT
CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCEEECCCCCHHEEEEEEEEC
ANDPQKIGIFNNGAQAWNHSFYWNSLSPDGGGEPGGILAEKINTDLGGFDKFREELKNAA
CCCCCEEEEEECCHHHHCCCEEECCCCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHH
TTQFGSGWAWLVLDNGVLKIVKTANAGTPLTSGQTPLLAVDVWEHAYYLDYQNRRPDYVS
CCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCHHH
TTIEHLLNWEFAEKNFLAAK
HHHHHHHCCCCCCCCEECCC
>Mature Secondary Structure 
AYQQPPLPYADNALEPYISATTIGFHYGKHHATYITNYNNLVANTPLDAMTIEEVIIAT
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCEEECCCCCHHEEEEEEEEC
ANDPQKIGIFNNGAQAWNHSFYWNSLSPDGGGEPGGILAEKINTDLGGFDKFREELKNAA
CCCCCEEEEEECCHHHHCCCEEECCCCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHH
TTQFGSGWAWLVLDNGVLKIVKTANAGTPLTSGQTPLLAVDVWEHAYYLDYQNRRPDYVS
CCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCHHH
TTIEHLLNWEFAEKNFLAAK
HHHHHHHCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]